Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182281g00001 ATGTTTCAGTTTCATCCACAAGGAGCTCAAAAACAGAGTTGTACTCTGCTTGCTGTAACCTGTGGCTCTGAGAAGAAGCTGCCACCACCACAGGATCAGCACAATTACCCGTTCCCTCAGCTGGTTTCTTCTGGGCGTCTTGAGGTTCAAGTCTTGAACAATCCCGAGAAGGAACAGTTTCGGAAAGTTCTGGATACATATCAGCCAAATTTTGTTTACTTACAAGGGGAGCATCTAGAGAATGGTGAAGTTGGTTCGTTGGTTTGGCAGGGTGTGAAATTGTCGAATCCCGACGATATAACAGAGCTCTTTGGTTCCACATTGCCAACTGCTGTTTATTTAGAAATACCAAATGGAGAAGATTTTGCAGAGGCTCTTCATGTTAAGGGAATTCCATATGTGATATTTTGGAAGAATGCGTTTTCTTATTTTGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTCCAGAGTTCATCTACACATACATGGGATGCTTTCCATCTTGCACGTGCCTCTTTTGAGTTTTACTGTGTTCAAAACAATCACGTACTTCCTACCGACAGCAGTGATGCAGATAGTGAGATGGGGCCACACCTTTTGGGCGAGTGTCTCAAAATTAACATTGACCCTCCTGAGGTGGCTGAAGAAGATGAGGAAGATGATGAAAATTCCTCAGGCGATCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCTGCTGTTGACGAGTCATTGCTGAGATCTTTGGAGGATGGACTCCGTGCTCTCTTAACTATTGAAATCCGCGGTTGCAAGCTCCATGGCAAGTTTAGTGCACCCCCACCACCTCTTCAGGCAGCTGCTTTTTCTCGTGGTGTTGTTACCATGAGATGTGATATATCTACCTGTAGTTCAGCACATATCTCTCTCCTGGTAGCAGGCAGTGCACAAACTTGTTTTAACGATCAGCTCTTGGAGAATCACATAAAAAATGAAATAATTGAGAAGAGTGAAATAGTTCATGCACAACTCAAAGAGGGGAACAAACAGAGTTCTTCCGAACCTCGCAGATCTGCTTCAATTGCATGTGGGGCAACAGTATTTGAAGTTTGCATGAAGCTTCCTCAATGGGCCTTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCGTTGCTAGTATTCAGGGGTTGCCTGTAGCGTCTTTCGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGCTATGAGAAAGATAGCTATACAAACAGTATGATTTTCAGCAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTACAAGAAAGAGGTATGAACCAACCCAAGGAGTGAGTCTTGCCCTTCATGATGGCGCCTTTGCAGGGGATGGTGCTGTTCGAAAAGTAGATGAAGAAGAAGGGGATGGAAAAATGGCAAATGGGATTAGCACACCCTTAACTCCAGCTAGGCAGAGATTGAAAGTATCAGCAATGAGGCCAATTCCTCATATTCATCGCCATAGAATGACACCTTTTAGTGGACCTTCTCAGACAGATGGATTTGATGGTACCCCAGTTGAGCCTCATTTGCCACTTGTTGTCCCTGCAAAGAGGAGTAGTATTGGGTCAACTTCTGCATCACACAGAAAATCATTTTTAGGCTCGGCCCAGTCTAAGCAGGTTATTTCACTGAACCCATTGCCTTTGAAGAAACATGGTTGTGGCAGAGGCTCTGTACAGACCTGCTCTGAGGAGGAATTTCTTAAAGATGTGATGGAGTTTTTAATTATTCGGGGACATAACCGATTGATTCCCCAAGGAGGCCTTGCTGAGTTCCCTGATGCTATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACTAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGAGTTGGAAATACACTTAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGTATATGTGGCGAGTGGGCCCATTTTGGGTGTGACAGAAGACAGGGACTAGGGGCATTCAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGCCCTCACTGTAGTGTTACAAATTTCAAGAAGAAACAAAGTGTTGCCAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACTCCTTTAA 2343 0.4388 MFQFHPQGAQKQSCTLLAVTCGSEKKLPPPQDQHNYPFPQLVSSGRLEVQVLNNPEKEQFRKVLDTYQPNFVYLQGEHLENGEVGSLVWQGVKLSNPDDITELFGSTLPTAVYLEIPNGEDFAEALHVKGIPYVIFWKNAFSYFAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNHVLPTDSSDADSEMGPHLLGECLKINIDPPEVAEEDEEDDENSSGDLPAIKIHDDEVNLRFLICGAPSAVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVAGSAQTCFNDQLLENHIKNEIIEKSEIVHAQLKEGNKQSSSEPRRSASIACGATVFEVCMKLPQWALQILRQLAPDVSYRSLVALGVASIQGLPVASFEKDDAERLLFFYQSYEKDSYTNSMIFSSPPGWLKPPPPTRKRYEPTQGVSLALHDGAFAGDGAVRKVDEEEGDGKMANGISTPLTPARQRLKVSAMRPIPHIHRHRMTPFSGPSQTDGFDGTPVEPHLPLVVPAKRSSIGSTSASHRKSFLGSAQSKQVISLNPLPLKKHGCGRGSVQTCSEEEFLKDVMEFLIIRGHNRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRLL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182281g00001 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Stsc182281g00001 780 Gene3D - 590 697 IPR036431 GO:0003677
Stsc182281g00001 780 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Stsc182281g00001 780 CDD PHD_ARID4_like 704 755 - -
Stsc182281g00001 780 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Stsc182281g00001 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 777 IPR042293 -
Stsc182281g00001 780 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Stsc182281g00001 780 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Stsc182281g00001 780 SMART ARID_2 591 694 - -
Stsc182281g00001 780 CDD ARID 596 694 - -
Stsc182281g00001 780 SMART bright_3 595 699 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182281g00001 Stsc-Chr182281 3137 10095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182281g00001 4 769 ARID Transcription Factor Family AT3G43240 61.161 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc182281g00001 ARID 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182281g00001 - - gmx:100820590 1345.1