Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182280g00005 ATGATCATGTCTCTCATCATATTTCTCCTATGTATCTCTTCACTAAGCATTGCTGTGCATGTACCCTTGAGTTCAGACACCGATAAGATTGCCTTGCTTGCTTTGAAGGAAAAACTTACCAATGGCGATCCTCATGCTCTCCCATCATGGAATGAGTCTCTCCATTTCTGTGAATGGCAGGGTGTTACATGCAGTCGCCGACACATGAGAGTCTCAGCCTTGCAACTTGAAAATCAATACTGGGGTGGTACTCTTTCCCCATACTTGGGAAATCTAACATTCCTCAAGAAGATCAATCTTACCAACATCAACTTGCATGGTGAGATTCCTAGACAAGTTGGTCATTTGAAGAGGCTGCAGATTCTTGACTTGAGCTTCAATAATCTTGACGGTCAGATTCCTATAGAGATGATGAATTGTTCAAGCCTTCAAGTAATTATATTGTTTAACAATAATCTAACTGGCAAAATTCCTTCATGGATTGGTTCTATGATGCAACTCACTTCGCTGGGACTTGCATACAACAGTTTTGTTAGTAGTATTCCACCTTTTTTGGGAAATCTTTCATCGCTTGAAAAGTTGTCACTTGCATACAATCATTTAGAAGGAACCATAACTCCAGCTTTAGGTAAGATGTCCAATTTGAAACTTTTATATTTGGGTGAAAACAATTTTTCTGGCCATGTCCCTCCTTCACTTTACAACCTTTCAAATATTCAAGATCTTTCATTCACTGAAAACCAGTTAGTGGGTAATCTTCTCTTGAATATACCAATGGCTTTTCCTAATCTTCAGATGTTTGGATGTGGAATGAATCGATTCACTGGTACTTTCCCATCTTCAATCTCCAACCTTTCCGAATTACAACTGTTCGACATAATAGCAAATGATTTTCATGGACCAATTTCTCCTACACTAGGAAGTTTACACAAACTTCATCATTTTAATATTGGTCATAACAGATTCGGAAGTGGAAGGGATGGCGATTTGAATTTTCTTTCCTCGTTACAGAATTGTACTCAATTGCAAAAACTTGGCATTGATAACAATTATTTAGGCGGTGTATTGACAGAAGATCTCATAGCCAACTTATCGAGCAATCTCGTTTGGCTTACTATGGGGTCCAATCAAATATCTGGAAGGATACCTGATGGAATTGGAAAACTAATCAACCTTGAAGCACTTGGTATGGAGGGAAATTCCCTTGAGGGAAAAATTCCATATGCAATTGGAAAGCTCAAGAATCTGGTAGAGTTGGACTTGGGGGCAAATAAGTTGTTTGGCAATATTCCTCTTGTCATTGGAAACCTTACTATGTTGTCTTACCTTGATCTGAGCAATAACAAGTTTTCCAGATTCATTCCCTTTACACTTGCAAATTGCACCAAGATGGAGAGATTTATTGCTCATGATAACAACTTAAGTGGTAATATACCCGTTCAAACATTTGGCTTCCAGAAAGGTTTGATAGAGCTTCAACTGTATTCCAACTTCTTTACGGGCCCCATTCCTTCTGATCTTAGTAATTTGATCCATCTTTCCATATTGTATTTGCATGAAAACATGCTGACTGGTGAGATTCCCATAGGACTTAGTACTTGCTCTGCCTTAACAGAGCTTGTACTAGAAAGAAACTTGTTCTATGGGAGCATACCTTCATTCTTGGGATCTTTACTATCCCTTGAACTCTTAGATCTTTCTAGTAACAATTTCTCAAGCACAATCCCACACCAACTTGTGAATCTCTCATCGCTGAGTACTTTGAACTTATCTCACAACAATCTCTCTGGTGAGGTCCCGATAGGAGGGGTATTTAATAACATCACAGCAATATCACTCACGGGAAACAAACATCTTTGTGGTGGGATATCTCAATTGAATCTTCCTGCTTGTCCTGTGTTTCCCTTACATAAGAAACACAAGAGATCCATTAAAAAGAGAGTCATCCTCATCATTGCATTTGGAGGGGTTCTAATCATTTTTGCAGCTTTACTTAGTATATATCTTCTCAAGAAAAAGGCAAAAATGTTATCCACTACTTCTCTGGCTTTACAATATGGCTATGTGAAGGTTTCCTATGGAGAGCTGCATCAAGCAACAAATGGATTTTCTTCATCCAATCTAGTTGGTACAGGAAGCTTTTCCTCTGTGTATAGAGGAACCCTTGTCAATTTTGAGAGACCTGTTGCTGTCAAAGTGCTGAACCTTAAAATGCGTGGGGCATCGAAGAGTTTCATGGCTGAATGCAAAGCTCTAGGAAAAATCAAACACAGAAACCTTGTCAGCATACTGACTTGTTGTTCAAGCGTTGATTACAAAGAGAATGATTTCAAGGCCATAGTGTTCGAGTACATGCCTAATGGGAGTCTAGAAACCTTGTTGCACAACACTATTGAAGATGACGAATCCACAAATCCAAGTCTCAACCTTATACAAAGAGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGATTCTGGGGAGGAAGCAATAGTTCACTGTGATGTTAAGCCAAGTAATGTTTTGCTTGATGATGAATTTGTTGCTCACTTGGGAGATTTTGGAATAGCTAAACTCATTCATGGTGCGGCAAGCCATTCTAGCAGTAATCAAGCAAGCTCCTCTGCAGTTAAGGGAACCATCGGATATATTCCACCAGAGTATGGAGGAGGAGGGTCAGTGTCAACCGAAGGAGACATGTATAGCTATGGAATACTTCTTTTGGAGATGCTCACTGCAAAGAGGCCAACTGATACCATGTTTGGTGAAGGTCTAAACCTTCGCAATTTCTGTAACATGGCAACGGCAGAAGGAATCATTGAAATTGTTGATTCAAGATTGCTCATTCCAATTGATGAACAAGATCAGGGAAGAAGGGTCATCACAAGGCAGCAAAATATGGAAGACACCATTTCAGAGTGTCTTGTGTCATTTGCTAGGATTGGAATTGCATGTTCCGAAAAATCTCCATCTCAACGAATGGGCATAAAAGATGTCATCATGGAGTTACATGCAATTAAACAGAAGCTACTTTCATGA 3054 0.3923 MIMSLIIFLLCISSLSIAVHVPLSSDTDKIALLALKEKLTNGDPHALPSWNESLHFCEWQGVTCSRRHMRVSALQLENQYWGGTLSPYLGNLTFLKKINLTNINLHGEIPRQVGHLKRLQILDLSFNNLDGQIPIEMMNCSSLQVIILFNNNLTGKIPSWIGSMMQLTSLGLAYNSFVSSIPPFLGNLSSLEKLSLAYNHLEGTITPALGKMSNLKLLYLGENNFSGHVPPSLYNLSNIQDLSFTENQLVGNLLLNIPMAFPNLQMFGCGMNRFTGTFPSSISNLSELQLFDIIANDFHGPISPTLGSLHKLHHFNIGHNRFGSGRDGDLNFLSSLQNCTQLQKLGIDNNYLGGVLTEDLIANLSSNLVWLTMGSNQISGRIPDGIGKLINLEALGMEGNSLEGKIPYAIGKLKNLVELDLGANKLFGNIPLVIGNLTMLSYLDLSNNKFSRFIPFTLANCTKMERFIAHDNNLSGNIPVQTFGFQKGLIELQLYSNFFTGPIPSDLSNLIHLSILYLHENMLTGEIPIGLSTCSALTELVLERNLFYGSIPSFLGSLLSLELLDLSSNNFSSTIPHQLVNLSSLSTLNLSHNNLSGEVPIGGVFNNITAISLTGNKHLCGGISQLNLPACPVFPLHKKHKRSIKKRVILIIAFGGVLIIFAALLSIYLLKKKAKMLSTTSLALQYGYVKVSYGELHQATNGFSSSNLVGTGSFSSVYRGTLVNFERPVAVKVLNLKMRGASKSFMAECKALGKIKHRNLVSILTCCSSVDYKENDFKAIVFEYMPNGSLETLLHNTIEDDESTNPSLNLIQRVNIALDVAFALDYLHNDSGEEAIVHCDVKPSNVLLDDEFVAHLGDFGIAKLIHGAASHSSSNQASSSAVKGTIGYIPPEYGGGGSVSTEGDMYSYGILLLEMLTAKRPTDTMFGEGLNLRNFCNMATAEGIIEIVDSRLLIPIDEQDQGRRVITRQQNMEDTISECLVSFARIGIACSEKSPSQRMGIKDVIMELHAIKQKLLS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182280g00005 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 673 784 - -
Stsc182280g00005 1017 SUPERFAMILY L domain-like 365 621 - -
Stsc182280g00005 1017 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Stsc182280g00005 1017 Pfam Leucine rich repeat 536 595 IPR001611 GO:0005515
Stsc182280g00005 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Stsc182280g00005 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 330 635 - -
Stsc182280g00005 1017 Gene3D Transferase(Phosphotransferase) domain 1 785 1016 - -
Stsc182280g00005 1017 SMART serkin_6 703 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182280g00005 1017 Pfam Protein kinase domain 705 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182280g00005 1017 SUPERFAMILY Protein kinase-like (PK-like) 684 1011 IPR011009 -
Stsc182280g00005 1017 Gene3D Ribonuclease Inhibitor 329 634 IPR032675 -
Stsc182280g00005 1017 Gene3D Ribonuclease Inhibitor 23 257 IPR032675 -
Stsc182280g00005 1017 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 65 329 - -
Stsc182280g00005 1017 SMART LRR_typ_2 116 140 IPR003591 -
Stsc182280g00005 1017 SMART LRR_typ_2 510 534 IPR003591 -
Stsc182280g00005 1017 SMART LRR_typ_2 582 607 IPR003591 -
Stsc182280g00005 1017 SMART LRR_typ_2 212 236 IPR003591 -
Stsc182280g00005 1017 SMART LRR_typ_2 188 211 IPR003591 -
Stsc182280g00005 1017 SMART LRR_typ_2 558 581 IPR003591 -
Stsc182280g00005 1017 SMART LRR_typ_2 437 460 IPR003591 -
Stsc182280g00005 1017 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
Stsc182280g00005 1017 PRINTS Leucine-rich repeat signature 440 453 - -
Stsc182280g00005 1017 PRINTS Leucine-rich repeat signature 582 595 - -
Stsc182280g00005 1017 Gene3D Phosphorylase Kinase; domain 1 666 784 - -
Stsc182280g00005 1017 PANTHER OS04G0122200 PROTEIN 98 206 - -
Stsc182280g00005 1017 Gene3D Ribonuclease Inhibitor 258 328 IPR032675 -
Stsc182280g00005 1017 ProSiteProfiles Protein kinase domain profile. 703 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182280g00005 1017 SUPERFAMILY L domain-like 26 322 - -
Stsc182280g00005 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182280g00005 Stsc-Chr182280 15501 18857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182280g00005 23 1016 Receptor kinase-like Gene Family AT3G47570 43.556 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc182280g00005 Pkinase 9.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182280g00005 - - ahf:112766919 1467.6