Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182280g00001 ATGAGACCTGTTGCTGTGAAGGTGTTGAATCTTCAAACACGCGGAGCAGCGAAGAGTTTCATGGCCGAATGCAAAGCTCTGGGAAAAATCAAGCACAGAAATCTTGTCAACATATTGACTTGTTGTTCAAGTGTTGATTATAAAGGGAATGATTTCAAGGCCATAGTGTTTGAGTTCATGTCTAATGGAAGTCTAGAAACCTTGTTGCATAGCACTAATGAAGATAGAGAGCCCACAAATCCAAGTCTCAACCTTTTGCAAAGAGTAAATATTGCTCTTGATGTAGCTTTTGCATTAGATTATCTTCACAATGATTTAGAAGAAGCTGTAGTTCATTGTGATATTAAGCCAAGCAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTTGGATTAGCTAAGCTCGTTCATGGTGTTGCAAGCCACTCTAGCAGTGATAAAGGTAGTTCATCTGTAATTAAAGGAACCATTGGATATGTTCCACCAGAGTATGGAGCAGGTGGATCAATATCAGCAGAAGGAGACATGTATA 541 0.3974 MRPVAVKVLNLQTRGAAKSFMAECKALGKIKHRNLVNILTCCSSVDYKGNDFKAIVFEFMSNGSLETLLHSTNEDREPTNPSLNLLQRVNIALDVAFALDYLHNDLEEAVVHCDIKPSNVLLDDDMVAHLGDFGLAKLVHGVASHSSSDKGSSSVIKGTIGYVPPEYGAGGSISAEGDMY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182280g00001 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Stsc182280g00001 180 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182280g00001 180 PANTHER OS04G0122200 PROTEIN 4 180 - -
Stsc182280g00001 180 SMART serkin_6 2 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182280g00001 180 Pfam Protein kinase domain 3 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182280g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 3 180 IPR011009 -
Stsc182280g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182280g00001 Stsc-Chr182280 17 649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182280g00001 4 180 Receptor kinase-like Gene Family AT3G47570 57.542 2.93e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc182280g00001 Pkinase 4.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182280g00001 - - ahf:112702394 304.679