Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc182267g00002 | ATGCCAGAATATGATTCCTTGGTTATGGCAGTAGATCACTACATCTCCCAGGAATGGAAAACCATCCCGAATTCAGCAACCGAAACAGAAAACTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGGGAACCGGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTGCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGGTATATCCCACACCACGATGGTTCCTCTCTATGGCCGCGGCCAGGCTCCGTCGGATAGGAAGGCATTGTCTAGTGATTTTTTCGTGCCGCCAAGGCCGCCTGCTTCCAGGGCTCAATCTCTACTGAATGCAAATTCTCAGAGTGGACAACGGCTTCCATATCGAAATCCATATCAGGGTCAGTATTTAAGCCCTGAGGAGGAGGATGCTGCCACTTTGCAGCTGCTAAATGGTGCTACCATGAATCTAGGATCCCAGCACACTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGGTAGAGTGTTTGGCAACCCGGGAAACTTGTCTGCATACCCGAATTCTTATCAACCCAGGGCAGGTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGTTTGCACAGAGTCTCAATTTTTCTCTTTTGCTTCTTCCTTCTGTGTCTTATTGTCTTCTGA | 726 | 0.4725 | MPEYDSLVMAVDHYISQEWKTIPNSATETENCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKAGISHTTMVPLYGRGQAPSDRKALSSDFFVPPRPPASRAQSLLNANSQSGQRLPYRNPYQGQYLSPEEEDAATLQLLNGATMNLGSQHTSLVGMFGEMFYGRVFGNPGNLSAYPNSYQPRAGNNSRLRRQEMEADKCLHRVSIFLFCFFLLCLIVF | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc182267g00002 | 241 | ProSiteProfiles | Zinc finger RING-type profile. | 38 | 85 | IPR001841 | - | |
Stsc182267g00002 | 241 | SMART | ring_2 | 38 | 84 | IPR001841 | - | |
Stsc182267g00002 | 241 | SUPERFAMILY | RING/U-box | 34 | 97 | - | - | |
Stsc182267g00002 | 241 | CDD | RING-HC_AtRMA-like | 36 | 86 | - | - | |
Stsc182267g00002 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 136 | IPR013083 | - | |
Stsc182267g00002 | 241 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 14 | 135 | - | - | |
Stsc182267g00002 | 241 | ProSitePatterns | Zinc finger RING-type signature. | 53 | 62 | IPR017907 | - | |
Stsc182267g00002 | 241 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 16 | 238 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Stsc182267g00002 | 241 | Pfam | Zinc finger, C3HC4 type (RING finger) | 38 | 84 | IPR018957 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc182267g00002 | Stsc-Chr182267 | 3983 | 5901 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc182267g00002 | 14 | 227 | C3H Transcription Factor Family | AT4G27470 | 39.130 | 2.73e-40 | 137 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc182267g00002 | K10666 | - | gmx:100816864 | 315.464 |