Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182267g00002 ATGCCAGAATATGATTCCTTGGTTATGGCAGTAGATCACTACATCTCCCAGGAATGGAAAACCATCCCGAATTCAGCAACCGAAACAGAAAACTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGGGAACCGGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTGCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGGTATATCCCACACCACGATGGTTCCTCTCTATGGCCGCGGCCAGGCTCCGTCGGATAGGAAGGCATTGTCTAGTGATTTTTTCGTGCCGCCAAGGCCGCCTGCTTCCAGGGCTCAATCTCTACTGAATGCAAATTCTCAGAGTGGACAACGGCTTCCATATCGAAATCCATATCAGGGTCAGTATTTAAGCCCTGAGGAGGAGGATGCTGCCACTTTGCAGCTGCTAAATGGTGCTACCATGAATCTAGGATCCCAGCACACTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGGTAGAGTGTTTGGCAACCCGGGAAACTTGTCTGCATACCCGAATTCTTATCAACCCAGGGCAGGTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGTTTGCACAGAGTCTCAATTTTTCTCTTTTGCTTCTTCCTTCTGTGTCTTATTGTCTTCTGA 726 0.4725 MPEYDSLVMAVDHYISQEWKTIPNSATETENCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKAGISHTTMVPLYGRGQAPSDRKALSSDFFVPPRPPASRAQSLLNANSQSGQRLPYRNPYQGQYLSPEEEDAATLQLLNGATMNLGSQHTSLVGMFGEMFYGRVFGNPGNLSAYPNSYQPRAGNNSRLRRQEMEADKCLHRVSIFLFCFFLLCLIVF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182267g00002 241 ProSiteProfiles Zinc finger RING-type profile. 38 85 IPR001841 -
Stsc182267g00002 241 SMART ring_2 38 84 IPR001841 -
Stsc182267g00002 241 SUPERFAMILY RING/U-box 34 97 - -
Stsc182267g00002 241 CDD RING-HC_AtRMA-like 36 86 - -
Stsc182267g00002 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 136 IPR013083 -
Stsc182267g00002 241 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 14 135 - -
Stsc182267g00002 241 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Stsc182267g00002 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc182267g00002 241 Pfam Zinc finger, C3HC4 type (RING finger) 38 84 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182267g00002 Stsc-Chr182267 3983 5901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182267g00002 14 227 C3H Transcription Factor Family AT4G27470 39.130 2.73e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182267g00002 K10666 - gmx:100816864 315.464