Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182267g00001 ATGGCAGTAGATCACTACATCTCCCAGGAATGGAAAACCATCCCGAATTCAGCAACCGAAACAGAAAACTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGGGAACCGGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTGCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGGTATATCCCACACCACGATGGTTCCTCTCTATGGCCGCGGCCAGGCTCCGTCGGATAGGAAGGCATTGTCTAGTGATTTTTTCGTGCCGCCAAGGCCGCCTGCTTCCAGGGCTCAATCTCTACTGAATGCAAATTCTCAGAGTGGACAACGGCTTCCATATCGAAATCCATATCAGGGTCAGTATTTAAGCCCTGAGGAGGAGGATGCTGCCACTTTGCAGCTGCTAAATGGTGCTACCATGAATCTAGGATCCCAGCACACTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGGTAGAGTGTTTGGCAACCCGGGAAACTTGTCTGCATACCCGAATTCTTATCAACCCAGGGCAGGTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGTTTGCACAGAGTCTCAATTTTTCTCTTTTGCTTCTTCCTTCTGTGTCTTATTGTCTTCTGA 702 0.4758 MAVDHYISQEWKTIPNSATETENCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKAGISHTTMVPLYGRGQAPSDRKALSSDFFVPPRPPASRAQSLLNANSQSGQRLPYRNPYQGQYLSPEEEDAATLQLLNGATMNLGSQHTSLVGMFGEMFYGRVFGNPGNLSAYPNSYQPRAGNNSRLRRQEMEADKCLHRVSIFLFCFFLLCLIVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182267g00001 233 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Stsc182267g00001 233 SUPERFAMILY RING/U-box 26 89 - -
Stsc182267g00001 233 CDD RING-HC_AtRMA-like 28 78 - -
Stsc182267g00001 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Stsc182267g00001 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 128 IPR013083 -
Stsc182267g00001 233 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Stsc182267g00001 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Stsc182267g00001 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc182267g00001 233 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182267g00001 Stsc-Chr182267 3983 6111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182267g00001 6 219 C3H Transcription Factor Family AT4G27470 39.130 2.02e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182267g00001 K10666 - gmx:100816864 315.464