Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182259g00006 ATGTCTGCGGCACTCGATATGACCCTTGACGACATCATTAAGAACAACAAGAAGTCCGGATCCGGTGGATCCCGCGGCAGCCGTCCTCGCCAATCCGGACCCGGACCTGCTCGCCGCTTCCCCAATCGCGCCGCCAACCGTGCTGCGCCTTACGCCGCCGCTAAGGCGCCGGAGACTGCGTGGCAGCACGACCTGTATGCAGATCAGGCTGTGGGAGCTTTCCCTGGACAGGGTGCTGGTCGAGCGTCGTCGATTGAAACGGGAACCAAGCTATACATCTCGAATTTGGATTACGGCGTTTCTAACGATGATATCAAGGAATTATTTTCTGAAGTCGGTGACCTGAAACGACACACAGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCGGAAGTAGTCTTCTCACGGAGAGCTGATGCTGTAGCTGCGGTGAAGAGGTACAACAATGTGCAACTTGATGGGAAACCAATGAAGGTAGAGATTGTTGGAACAAATATCACAACACAAGCTATTGCTCCAGCAGCAAATGGTGGTTTTGGAAATTTGAATGGAGTTCCCAGAAGTGGACAAGGGAGAAGTGGAGGGCCATTAGTACGACCACGTGGTGGTGGTGGAGGTAGAGGGCGTGGCCCTCCTCGAAGAGGTCGAGGACGCGGAAGAGGTCGTGGTGGTGAGAAGGTATCTGCGGAAGATCTTGATGCTGATTTGGAGAAGTACCATTCAGAGGCAATGCAGTTAAACTGA 750 0.532 MSAALDMTLDDIIKNNKKSGSGGSRGSRPRQSGPGPARRFPNRAANRAAPYAAAKAPETAWQHDLYADQAVGAFPGQGAGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNITTQAIAPAANGGFGNLNGVPRSGQGRSGGPLVRPRGGGGGRGRGPPRRGRGRGRGRGGEKVSAEDLDADLEKYHSEAMQLN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182259g00006 249 SUPERFAMILY RNA-binding domain, RBD 85 196 IPR035979 GO:0003676
Stsc182259g00006 249 FunFam THO complex subunit 4 82 234 - -
Stsc182259g00006 249 SMART rrm1_1 90 162 IPR000504 GO:0003723
Stsc182259g00006 249 MobiDBLite consensus disorder prediction 177 249 - -
Stsc182259g00006 249 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 247 - -
Stsc182259g00006 249 MobiDBLite consensus disorder prediction 14 28 - -
Stsc182259g00006 249 SMART FoP_duplication_2 177 249 IPR025715 -
Stsc182259g00006 249 MobiDBLite consensus disorder prediction 1 53 - -
Stsc182259g00006 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Stsc182259g00006 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Stsc182259g00006 249 CDD RRM_THOC4 89 163 - -
Stsc182259g00006 249 Gene3D - 74 231 IPR012677 -
Stsc182259g00006 249 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182259g00006 Stsc-Chr182259 17111 21050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182259g00006 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.97e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182259g00006 K12881 - gmx:100783362 301.597