Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182259g00004 ATGGCTCAAAGAATTGGAACAAAGCTGTTCGTGAGCAGATTATCGTTTTACACTACCAAAGACCAGTTCAAGAACTTGTTTTCTCCTTTCGGACAAGTTACGGAAGCGAATCTGGTGATGGATTCCAGAACTGGAAGGACCAAAGGATTTGGTTTCGTTTCCTATCAATCTGAAGACGAAGCTCTCAAGGCTATCAAAGCCTTGAATGGCAGGATAATTGCAGGAAGGCTTATTTTCGTTGAACCTGCTAAAGATAATAGGTGA 264 0.4167 MAQRIGTKLFVSRLSFYTTKDQFKNLFSPFGQVTEANLVMDSRTGRTKGFGFVSYQSEDEALKAIKALNGRIIAGRLIFVEPAKDNR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182259g00004 87 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc182259g00004 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Stsc182259g00004 87 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 86 - -
Stsc182259g00004 87 SUPERFAMILY RNA-binding domain, RBD 6 86 IPR035979 GO:0003676
Stsc182259g00004 87 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 87 - -
Stsc182259g00004 87 Gene3D - 2 87 IPR012677 -
Stsc182259g00004 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182259g00004 Stsc-Chr182259 11009 11824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182259g00004 6 80 Eukaryotic Initiation Factors Gene Family AT1G71770 36.000 3.11e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182259g00004 - K13195 pcin:129306862 121.709