Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182259g00002 ATGAAGAGAGGAAGAGAAGAGGGTTGTAAGCAGATAGAGAAGGATAATTGTTTGATGCTATTAACCAAAGTTGGTGAAAGCGACAAGATTAATTCAGTGAAGGATAATAAAGAGCAAAGGAACGATGATGGTGCTTTCAAGTGCAAGACATGCAAAAGAAACTTCACTTCTTTTCAAGCACTTGGAGGCCACAGAGCAAGCCACAAGAAGCCCAAGCTCATGGTCTCAGACCTATCATGCCATTCTCAACACCTACGGGGGCCCAACAGTAAGCCCAGGAGGCACCCATGTCCAATTTGTGGGCTTGAGTTTTCAATTGGACAAGCCCTTGGAGGACACATGAGAAAGCATAGGGTTGCAACCACTAATAAAGACGATAATGGTGATGGGAATGGTCATCATAAAAGGTTAAATCTGTGCTTGGATTTGAACTTGACGCCATTGGAGAATGATCTTGTAAAGCTCGACCTCATCAGGATTCCTCTTCTTTCACTTCATTGA 501 0.4331 MKRGREEGCKQIEKDNCLMLLTKVGESDKINSVKDNKEQRNDDGAFKCKTCKRNFTSFQALGGHRASHKKPKLMVSDLSCHSQHLRGPNSKPRRHPCPICGLEFSIGQALGGHMRKHRVATTNKDDNGDGNGHHKRLNLCLDLNLTPLENDLVKLDLIRIPLLSLH 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182259g00002 166 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Stsc182259g00002 166 Gene3D Classic Zinc Finger 22 120 - -
Stsc182259g00002 166 SUPERFAMILY beta-beta-alpha zinc fingers 46 117 IPR036236 -
Stsc182259g00002 166 PANTHER ZINC FINGER PROTEIN ZAT5 13 150 - -
Stsc182259g00002 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Stsc182259g00002 166 Pfam C2H2-type zinc finger 94 118 - -
Stsc182259g00002 166 Pfam C2H2-type zinc finger 45 71 - -
Stsc182259g00002 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Stsc182259g00002 166 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Stsc182259g00002 166 SMART c2h2final6 46 68 IPR013087 -
Stsc182259g00002 166 SMART c2h2final6 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182259g00002 Stsc-Chr182259 5250 5892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182259g00002 1 160 C2H2 Transcription Factor Family AT2G28710 43.103 2.56e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc182259g00002 zf-C2H2_6 7.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182259g00002 - - gmx:100781211 179.489