Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182238g00002 ATGGAGAACGGAGAGGAAAAGGGCGTGGCGACACAGAGAACAGTTGTAGGGACCAAGAACGAGGTTGTTCTTCGAATTACCGACAACACCGAAAACGTCTTTTCCTATTCCCCACAGCACAACATCAACACTTCTTCCAAGGGTTCACCCTCAAAAGGCTTCCTAGATTCTTCACAAAATGTTGAACTAACAACAGAACTTCAGAATCTCAAGAACAGTAGTAGTAGTCCTGTTCTATCTCCAACTATTACCACTTCAACCCGCTCCGCTGGTCGTTCTGAATTCTCGAAGCCAAAATCCAGATTGGTGGAACCGCCACATCCAATAATAGCAGCAAGCTTTCATGAAGACAAATCCCAAATCAAGAGCTTCAAATCACCCGCAAGGACTCCAACCACCAAAAAGGGTACTCCGAATGCCACACCTTCAAGGGATGTTCCTATTACCCCAAGAACCCCTTTGATTGGGACTCCAATGGAAGAAGATGATGATGAAGAGGAGGAGGAGTTTTACAAAACCACAAATGTTGAAGTGAGCAAGAAGAGATCTAGTAAGAGGTGGAAGTTCTTGTTTATGTTTGAGTGGTTTGGTTTTGTTTCCATTGGTGGGTTCTTCATTGCCTCCTTGGCAATGGAAAGGCTTCGAAATTCCGAAATCTGGGGCTTGGAGCTGTGGAAATGGTGTGTTCTTGCATTGGTTATCCTCTGTGGGAGACTTGTCACTGGGTGGTTTATAAATGCTATGGTTTTCTTGATTGAAAGGAATTTCTTGTTCAAGAAGAAGGTTCTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAAGCGTTTTTATGGTTGGGCCTTGTTCTTATGGCATGGGGTTTGATCTTCAATGACGGGGTTAAGAGATCAAGAAGAGTTAATAGGATTCTTGATTACATTACTAGAGCTCTTGGATCTTGTCTTATTGGGGCAGCCCTATGGTTGGCGAAAACATTGTTGATTAAGCTACTAGCTTCACATTTCCAATCTGCTAGGTTTTTCGACCGGATTCAGGAGTCGATTTTTCATCAATACATTCTTCGGACGCTTTCAGGGCCTCCCTTGATGGAAATTGCAGAAAATGTGGGAAAGAGTTCGAGTAGCGGCCGGTTGAGTCTTAAGACTTTGGTTAGGGAAAATGGGAATCAAGAGAAGAAAGAAGAGGTCATTGATGTGGACAAGCTCAAGAAAATGAAACAAGAGAAGGTTTCTGCTTTGACTATGAAAGGATTGATCAATGTGATAAAGAGTTCTGGATTGACCACAATTGTGCCGCAGAGTGTTGATGAAGATGAGAATGAGCAGGTGGATAGTGAGATTACTAGTGAGTTGGAAGCAAAGGCTGCGGCGAATCGAATCTTCAGCAATGTAGCCAAGCCAGGAAGCAAGTACATTGAGAAGGAAGACCTATTGCGCTTCATGACCAATGAAGAAGTCGAAAACCTGCTTCCGTTATTTGAAGGAGCAGTTGCAACTGGAAGAATCAAGAGGAAATCTCTCAAGAATTGGCTGGTGAAAGTCTATAAAGAGCGTCAATCCCTTGTGCATTCACTAAATGATACCAAAACAGCTGTTGATGATTTGAACTTGCTTGCTTCCGTGGTCATAGCTATTGTGATCATCATTGTTTGGTTGCTTATAATGGGGTTCCTCACAACCCATGTTCTTCTCTTCATTTCATCTCAGCTTTTACTTGCAGTGTTTGTATTTGGTAACTCAGCTAAGACTGTCTTTGAAGCTATTATATTCATTTTCGTGAGGCATCCGTTTGATGTTGGCGATCGTTGTGTCATTGACGGTGTTCAGATGACTGTTGAGGAGATGAACATACTAACAACAATCTTCTTGAGATATGACAATGAAAAGATTTCATATCCAAATTCAGTTCTTGCAAACAAACCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGCGAATCAATCGAATTTGCAGTCGATATGTCGACACCAATGGAGAGTATCGCAGCTCTTAAGGCAAGAATAAAGTCGTAA 2034 0.4213 MENGEEKGVATQRTVVGTKNEVVLRITDNTENVFSYSPQHNINTSSKGSPSKGFLDSSQNVELTTELQNLKNSSSSPVLSPTITTSTRSAGRSEFSKPKSRLVEPPHPIIAASFHEDKSQIKSFKSPARTPTTKKGTPNATPSRDVPITPRTPLIGTPMEEDDDEEEEEFYKTTNVEVSKKRSSKRWKFLFMFEWFGFVSIGGFFIASLAMERLRNSEIWGLELWKWCVLALVILCGRLVTGWFINAMVFLIERNFLFKKKVLYFVYGVQKSVQAFLWLGLVLMAWGLIFNDGVKRSRRVNRILDYITRALGSCLIGAALWLAKTLLIKLLASHFQSARFFDRIQESIFHQYILRTLSGPPLMEIAENVGKSSSSGRLSLKTLVRENGNQEKKEEVIDVDKLKKMKQEKVSALTMKGLINVIKSSGLTTIVPQSVDEDENEQVDSEITSELEAKAAANRIFSNVAKPGSKYIEKEDLLRFMTNEEVENLLPLFEGAVATGRIKRKSLKNWLVKVYKERQSLVHSLNDTKTAVDDLNLLASVVIAIVIIIVWLLIMGFLTTHVLLFISSQLLLAVFVFGNSAKTVFEAIIFIFVRHPFDVGDRCVIDGVQMTVEEMNILTTIFLRYDNEKISYPNSVLANKPISNFYRSPEMSESIEFAVDMSTPMESIAALKARIKS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182238g00002 677 Gene3D - 596 645 IPR023408 -
Stsc182238g00002 677 FunFam Predicted mechanosensitive ion channel 596 645 - -
Stsc182238g00002 677 SUPERFAMILY Sm-like ribonucleoproteins 586 645 IPR010920 -
Stsc182238g00002 677 MobiDBLite consensus disorder prediction 37 56 - -
Stsc182238g00002 677 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 19 677 IPR016688 -
Stsc182238g00002 677 MobiDBLite consensus disorder prediction 119 164 - -
Stsc182238g00002 677 Pfam Mechanosensitive ion channel 539 672 IPR006685 GO:0016020|GO:0055085
Stsc182238g00002 677 MobiDBLite consensus disorder prediction 72 93 - -
Stsc182238g00002 677 MobiDBLite consensus disorder prediction 124 146 - -
Stsc182238g00002 677 MobiDBLite consensus disorder prediction 72 103 - -
Stsc182238g00002 677 PIRSF Memb_At2g17000 9 677 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182238g00002 Stsc-Chr182238 8235 11629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182238g00002 66 675 Mechanosensitive Ion Channel Family AT5G12080 49.839 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182238g00002 K22048 - gmx:100777332 819.305