Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182238g00001 ATGGAGAACGGAGAGGAAAAGGGCGTGGCGACACAGAGAACAGTTGTAGGGACCAAGAACGAGGTTGTTCTTCGAATTACCGACAACACCGAAAACGTCTTTTCCTATTCCCCACAGCACAACATCAACACTTCTTCCAAGGGTTCACCCTCAAAAGGCTTCCTAGATTCTTCACAAAATGTTGAACTAACAACAGAACTTCAGAATCTCAAGAACAGTAGTAGTAGTCCTGTTCTATCTCCAACTATTACCACTTCAACCCGCTCCGCTGGTCGTTCTGAATTCTCGAAGCCAAAATCCAGATTGGTGGAACCGCCACATCCAATAATAGCAGCAAGCTTTCATGAAGACAAATCCCAAATCAAGAGCTTCAAATCACCCGCAAGGACTCCAACCACCAAAAAGGGTACTCCGAATGCCACACCTTCAAGGGATGTTCCTATTACCCCAAGAACCCCTTTGATTGGGACTCCAATGGAAGAAGATGATGATGAAGAGGAGGAGGAGTTTTACAAAACCACAAATGTTGAAGTGAGCAAGAAGAGATCTAGTAAGAGGTGGAAGTTCTTGTTTATGTTTGAGTGGTTTGGTTTTGTTTCCATTGGTGGGTTCTTCATTGCCTCCTTGGCAATGGAAAGGCTTCGAAATTCCGAAATCTGGGGCTTGGAGCTGTGGAAATGGTGTGTTCTTGCATTGGTTATCCTCTGTGGGAGACTTGTCACTGGGTGGTTTATAAATGCTATGGTTTTCTTGATTGAAAGGAATTTCTTGTTCAAGAAGAAGGTTCTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAAGCGTTTTTATGGTTGGGCCTTGTTCTTATGGCATGGGGTTTGATCTTCAATGACGGGGTTAAGAGATCAAGAAGAGTTAATAGGATTCTTGATTACATTACTAGAGCTCTTGGATCTTGTCTTATTGGGGCAGCCCTATGGTTGGCGAAAACATTGTTGATTAAGCTACTAGCTTCACATTTCCAATCTGCTAGGTTTTTCGACCGGATTCAGGAGTCGATTTTTCATCAATACATTCTTCGGACGCTTTCAGGGCCTCCCTTGATGGAAATTGCAGAAAATGTGGGAAAGAGTTCGAGTAGCGGCCGGTTGAGTCTTAAGACTTTGGTTAGGGAAAATGGGAATCAAGAGAAGAAAGAAGAGGTCATTGATGTGGACAAGCTCAAGAAAATGAAACAAGAGAAGGTTTCTGCTTTGACTATGAAAGGATTGATCAATGTGATAAAGAGTTCTGGATTGACCACAATTGTGCCGCAGAGTGTTGATGAAGATGAGAATGAGCAGGTGGATAGTGAGATTACTAGTGAGTTGGAAGCAAAGGCTGCGGCGAATCGAATCTTCAGCAATGTAGCCAAGCCAGGAAGCAAGTACATTGAGAAGGAAGACCTATTGCGCTTCATGACCAATGAAGAAGTCGAAAACCTGCTTCCGTTATTTGAAGGAGCAGTTGCAACTGGAAGAATCAAGAGGAAATCTCTCAAGAATTGGCTGGTGAAAGTCTATAAAGAGCGTCAATCCCTTGTGCATTCACTAAATGATACCAAAACAGCTGTTGATGATTTGAACTTGCTTGCTTCCGTGGTCATAGCTATTGTGATCATCATTGTTTGGTTGCTTATAATGGGGTTCCTCACAACCCATGTTCTTCTCTTCATTTCATCTCAGCTTTTACTTGCAGTGTTTGTATTTGGTAACTCAGCTAAGACTGTCTTTGAAGCTATTATATTCATTTTCGTGAGGCATCCGTTTGATGTTGGCGATCGTTGTGTCATTGACGGTGTTCAGATGACTGTTGAGGAGATGAACATACTAACAACAATCTTCTTGAGATATGACAATGAAAAGATTTCATATCCAAATTCAGTTCTTGCAAACAAACCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGCGAATCAATCGAATTTGCAGTCGATATGTCGACACCAATGGAGAGTATCGCAGCTCTTAAGGCAAGAATAAAGTCTTACTTGGAGAGCAAGCCACAGCATTGGCGTCCGAACCATAGCATAGTGGTTAAAGATATCGAGAATGTAGACAAGATGAAAATGAGACTGAGTGTTAATCACACCATAAACTTTCAGAACTATGGGGATAAGAGCAGCAGAAGATCTGAATTGCTCTTGGAGTTAAAGAAAATTCTTGAGGATCTTAAGATTAAGTATCATCTTCTGCCTCAAGAAGTTCATCTTCTGAGTTATGTAAATTCCGAAAATTCAACAAAACAATCAGTTTGGAGATGA 2307 0.4157 MENGEEKGVATQRTVVGTKNEVVLRITDNTENVFSYSPQHNINTSSKGSPSKGFLDSSQNVELTTELQNLKNSSSSPVLSPTITTSTRSAGRSEFSKPKSRLVEPPHPIIAASFHEDKSQIKSFKSPARTPTTKKGTPNATPSRDVPITPRTPLIGTPMEEDDDEEEEEFYKTTNVEVSKKRSSKRWKFLFMFEWFGFVSIGGFFIASLAMERLRNSEIWGLELWKWCVLALVILCGRLVTGWFINAMVFLIERNFLFKKKVLYFVYGVQKSVQAFLWLGLVLMAWGLIFNDGVKRSRRVNRILDYITRALGSCLIGAALWLAKTLLIKLLASHFQSARFFDRIQESIFHQYILRTLSGPPLMEIAENVGKSSSSGRLSLKTLVRENGNQEKKEEVIDVDKLKKMKQEKVSALTMKGLINVIKSSGLTTIVPQSVDEDENEQVDSEITSELEAKAAANRIFSNVAKPGSKYIEKEDLLRFMTNEEVENLLPLFEGAVATGRIKRKSLKNWLVKVYKERQSLVHSLNDTKTAVDDLNLLASVVIAIVIIIVWLLIMGFLTTHVLLFISSQLLLAVFVFGNSAKTVFEAIIFIFVRHPFDVGDRCVIDGVQMTVEEMNILTTIFLRYDNEKISYPNSVLANKPISNFYRSPEMSESIEFAVDMSTPMESIAALKARIKSYLESKPQHWRPNHSIVVKDIENVDKMKMRLSVNHTINFQNYGDKSSRRSELLLELKKILEDLKIKYHLLPQEVHLLSYVNSENSTKQSVWR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182238g00001 768 SUPERFAMILY Sm-like ribonucleoproteins 586 645 IPR010920 -
Stsc182238g00001 768 PIRSF Memb_At2g17000 9 766 IPR016688 -
Stsc182238g00001 768 Gene3D - 596 645 IPR023408 -
Stsc182238g00001 768 MobiDBLite consensus disorder prediction 37 56 - -
Stsc182238g00001 768 MobiDBLite consensus disorder prediction 119 164 - -
Stsc182238g00001 768 Pfam Mechanosensitive ion channel 539 742 IPR006685 GO:0016020|GO:0055085
Stsc182238g00001 768 MobiDBLite consensus disorder prediction 72 93 - -
Stsc182238g00001 768 MobiDBLite consensus disorder prediction 124 146 - -
Stsc182238g00001 768 MobiDBLite consensus disorder prediction 72 103 - -
Stsc182238g00001 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 19 761 IPR016688 -
Stsc182238g00001 768 FunFam Predicted mechanosensitive ion channel 596 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182238g00001 Stsc-Chr182238 8235 11629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182238g00001 66 752 Mechanosensitive Ion Channel Family AT5G12080 50.358 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182238g00001 K22048 - gmx:100777332 934.865