Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182231g00002 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATTCAGTTTTCTAATAGTCCCCACCAACACAAAATCTCCCAAGATCTGATCCTTCAAGATTATGCTTCTCTTGATGTCAATGATTCTGATAAAATAATTTTCACAAAAAGCCAATCTTCAAAGAAGCTATTTTATGATGGTGCTGCTGCTGAGGAGGATAACAACAACAACAAAGATGATTCTAACAACGATGATGATCATAAGAAGAAGAAGATTGTTCATAGAGAGATTGAGAGGCAAAGGAGGAAAGAAATGGCTACCCTTTATTCCTCTCTTAGATCCCTTCTCCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGTACATGCAGAATAACATCAAGCAACTTGGTGCTAAAAGAGATGAACTCAAGAAGAAGCTCTCAAATAATTATTCCAACATGGAAATAAATTATTACCACCATGGTAATAACAATAATAATAATAATAGTAATAATAATAATAAACCTACTACATCTAGCACTAACAGATTCTTCACTCTCCATGAGAGTAATGATGGTGTTCTTGGAATTGAAATCACCGGCGGCGCGGCCGCCGGAGGAGGAGAAGATGAAGGTGTCACACTTTCAGATATTCTGGCGTTGCTGGTTGAAGAAGAAGGACTTGAAGTTGTTAGTTACCTTTCTAGCAGAGTCAATGGAAGATTGGTCCATAGTGTTCAGTGTGAGGTAAACAATTCCAACAGTGTTGATCTATCTGAGCTGAGAAGGAAACTTGCCAATTTAATTCAATAA 822 0.3783 MFPLQRGNELVIQFSNSPHQHKISQDLILQDYASLDVNDSDKIIFTKSQSSKKLFYDGAAAEEDNNNNKDDSNNDDDHKKKKIVHREIERQRRKEMATLYSSLRSLLPLQFIKGKRSISDHMNEAVNYIKYMQNNIKQLGAKRDELKKKLSNNYSNMEINYYHHGNNNNNNNSNNNNKPTTSSTNRFFTLHESNDGVLGIEITGGAAAGGGEDEGVTLSDILALLVEEEGLEVVSYLSSRVNGRLVHSVQCEVNNSNSVDLSELRRKLANLIQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182231g00002 273 CDD bHLH_AtORG2_like 81 156 - -
Stsc182231g00002 273 Coils Coil 129 149 - -
Stsc182231g00002 273 MobiDBLite consensus disorder prediction 161 184 - -
Stsc182231g00002 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 132 IPR011598 GO:0046983
Stsc182231g00002 273 SMART finulus 86 138 IPR011598 GO:0046983
Stsc182231g00002 273 FunFam Transcription factor bHLH126 72 160 - -
Stsc182231g00002 273 MobiDBLite consensus disorder prediction 58 79 - -
Stsc182231g00002 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 150 IPR036638 GO:0046983
Stsc182231g00002 273 Gene3D - 71 160 IPR036638 GO:0046983
Stsc182231g00002 273 Pfam Helix-loop-helix DNA-binding domain 81 133 IPR011598 GO:0046983
Stsc182231g00002 273 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 68 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182231g00002 Stsc-Chr182231 11138 12702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182231g00002 74 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 39.796 1.37e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc182231g00002 HLH 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182231g00002 - - aip:107644748 368.622