Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182231g00001 ATGCCCTCTCGCAAACTCCTCCAACCGCCGCCTTCCACCACTCTCGACTTCCACAAACCAACACCCAACCTCCCTCAACGCCGCCACCACCACCACCACACTATCCTTCCCCTTCTCATCACCGCCGCCGCCTCCTCCATCCTTCTCCTCCTTCTCTTCCTTCTATTCCTCCGCCGTCGCAAGCGCACCGCCCCTTCCACCACCTCCACCGCCGGCGACGACTCCAAGCCCCCGCACCGCTTCTCCTACTCCCTCATAAAGCGCGCCACCAACTCCTTCTCCTCCCCACTCGGCCATGGCGGCTTCGGCACCGTCTTCTCCGGCACCCTTCCTCCTCCGGCGAGAACTCCCGTCGCAGTGAAGCTCATGGACCCCACAACAACCTCCCAGCAAGGCGAGCGTGAGTTCCACAACGAGCTCTTCTTCGCCTCCGTGCTCTGCCAATCCCCCCACGTGGTCTCCGCCGTGGGATTCTCATCGGACCCAAAACGGCGCCGTTTCCTCCTCGTGTACGACCTCATGGTGAACGGCAACCTCCAAGACGCTCTATTGCACAGAAAGTGCCCTGAACTCATGCAGTGGAACAAGCGCTTCTCTGTTATATTGGACATAGCAAAAGGTGTTCTTTTCCTTCATAGTTGTAACCCCCCTGTGATTCATAGTGATCTTAAGCCTAGTAATGTTCTCCTTGATGCTGAATTCAATGCCAAAATTGGGGATTTTGGACTTGCCCGTTTGAAATCGGATCCTAATTTGGATGTTTTGGATGGTGGTGGTGACTTTGAGAAGAAAAAGGAAGGGTTTTTGGAGTGTGATGGTGGCGGTGCGGTTGTTGTTGCGGTTGATGATTGTGAAACTGAGAGTGTTAACACTGGTTGTTACTTTGAGGAGGGTAGCTTGGGTGTGGATCATTCTCCTGAGTGTTTTGTTAGGGTGCCTAACTTGGAGACCTCGCCGGAGACTAATGCGGCTGGGGTGTCTGCCTCACCGGAGATGGCGGTGGCATTGGCAGGAGCAGCGTCTTTGTCGCCGGGGTTTGACAAGGCTAGTAGTGTTCAGAGTGAGAAGGGTGTTGTTAAGAAGAATGGGAAAGGGATGAGGAGTAACTCAGTGAGGGATTGGTGGTGGAAGCAGGATAATGATGAGGTTGCAGCCTCATCAAATCCTGTTGGGGAGAGTAAGTCGGTGAAGGATTATGTGATGGAGTGGATTGGGAAGGATGTTGATAAGGAAAGGCAAAAGGGGGAATGGGTTGGGGGAGAAGGTGGGCAATTGTGGAAGCAAGAGAAGAAGAGAATGAAGAAGAACAAGAAGAAGAAGAGTAGGAAGCACCAATTGGAATGGTGGGAATCAATGGAGGAGGAGAAGTTTGATGATGTTTTAAAGAAGGAGAAGAGGAGGCCAGCAAGGAAGTGGTGGAAGGAGGAGTATGGCGAAGAGCTCGAAAATAAGAAGAAGAAGAAAAAGAGGAAGGGTTTGAATAGCGATGATGATGTTGATGGTAATGGGAGTGAGTGGTGGGTGAGCGACGATGCTCTCTACAGGGACCGGAATTCGAAGAAGGCCAAGAGTAAGAGAGGCGCAGATTGGTGGTTGGAGGGGCTAAGTGGCGACTTATGGAGAACTCGCCGGAACAGCTTCGATTCGGCTAGTGGAGAAATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGGGGAACCGTTTGTTATGTTGCTCCGGAGTATGGCTACAGCGGAGATGTCTCAGAGAAGTGTGATGTATATAGTTTTGGTGTGTTGTTGCTAGTTATCATTTCAGGGAGGCGGCCACTTCAGGTGAACGGCTCGCCAATGTCCGAGTTTCACCGTGCAAATCTTTTGTCTTGGGCGAGACATTGTGCTAGAAATGGGAAGCTCATGGAGCTGGTTGATCAGTCTATTCAGTCATTAGAAAAGGATCAGGCTCTTCTATGTATCAAGGTGGCTTTGCTTTGTGTCCTTAAGTCCCCTGCTCGCCGCCCTTCGATGAAAGAGGTTGTCGGAATGCTCACTAGGGAGTTGGAGCCACCCCAACTGCCCGTTGAGTACTCGCCTTCAACCCCTTCTCGATTCCCATTCAAGACCCGGAAGAAAGGCCGGTGA 2127 0.52 MPSRKLLQPPPSTTLDFHKPTPNLPQRRHHHHHTILPLLITAAASSILLLLLFLLFLRRRKRTAPSTTSTAGDDSKPPHRFSYSLIKRATNSFSSPLGHGGFGTVFSGTLPPPARTPVAVKLMDPTTTSQQGEREFHNELFFASVLCQSPHVVSAVGFSSDPKRRRFLLVYDLMVNGNLQDALLHRKCPELMQWNKRFSVILDIAKGVLFLHSCNPPVIHSDLKPSNVLLDAEFNAKIGDFGLARLKSDPNLDVLDGGGDFEKKKEGFLECDGGGAVVVAVDDCETESVNTGCYFEEGSLGVDHSPECFVRVPNLETSPETNAAGVSASPEMAVALAGAASLSPGFDKASSVQSEKGVVKKNGKGMRSNSVRDWWWKQDNDEVAASSNPVGESKSVKDYVMEWIGKDVDKERQKGEWVGGEGGQLWKQEKKRMKKNKKKKSRKHQLEWWESMEEEKFDDVLKKEKRRPARKWWKEEYGEELENKKKKKKRKGLNSDDDVDGNGSEWWVSDDALYRDRNSKKAKSKRGADWWLEGLSGDLWRTRRNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPEYGYSGDVSEKCDVYSFGVLLLVIISGRRPLQVNGSPMSEFHRANLLSWARHCARNGKLMELVDQSIQSLEKDQALLCIKVALLCVLKSPARRPSMKEVVGMLTRELEPPQLPVEYSPSTPSRFPFKTRKKGR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182231g00001 708 MobiDBLite consensus disorder prediction 686 708 - -
Stsc182231g00001 708 ProSitePatterns Protein kinases ATP-binding region signature. 97 121 IPR017441 GO:0005524
Stsc182231g00001 708 MobiDBLite consensus disorder prediction 1 28 - -
Stsc182231g00001 708 SMART serkin_6 91 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182231g00001 708 Gene3D Transferase(Phosphotransferase) domain 1 544 686 - -
Stsc182231g00001 708 SUPERFAMILY Protein kinase-like (PK-like) 75 697 IPR011009 -
Stsc182231g00001 708 PANTHER OS07G0586332 PROTEIN 1 707 IPR044576 -
Stsc182231g00001 708 ProSiteProfiles Protein kinase domain profile. 91 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182231g00001 708 Gene3D Transferase(Phosphotransferase) domain 1 80 258 - -
Stsc182231g00001 708 Pfam Protein tyrosine and serine/threonine kinase 94 248 IPR001245 GO:0004672|GO:0006468
Stsc182231g00001 708 Pfam Protein tyrosine and serine/threonine kinase 564 677 IPR001245 GO:0004672|GO:0006468
Stsc182231g00001 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182231g00001 Stsc-Chr182231 3481 6168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182231g00001 561 614 Receptor kinase-like Gene Family AT4G04570 46.296 1.19e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Stsc182231g00001 PK_Tyr_Ser-Thr 6.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182231g00001 - - lja:Lj2g3v0473820.1 816.609