Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182230g00001 ATGGAAGAAGCTCAACCCTCTCAACCCTCGTCCTTGCTTATTCCAACTTTTTTTCTCTTGCTAGCGTTTTCTTTTCTTACAAAATATTACAAGTCAAAAACCAGGCCCAATCAGAAACTGCCACCTGGCCCATGGAAGTTACCAATTATTGGTAACTTCCATCAAGTTGCAAAAGCAGGACCTCTCCCACACCGTGCTTTCAGAGAGCTTGCAAAGAAACATGGACCTATCATGCACCTCAAACTCGGTGAGAATTCCACAGTAGTTATATCTTCCCCTAAGCTAGCCAAGGAGGTGCTCAAAACCTACGATGGATCTTTCCAGAAGAGGCCTATCATTGCTGCAGTTCCAACCATCACATATGGCCCTTCAGATATTGTGTTCTCTCCCTCCGGTGATTACTGGAGAGACATGCGAAAGATATGTACCCTTGAGCTTTTGAGCAAGAAAAGGGTTCAGTCTCTGGCTCATGTAAGAGAAGCAGAGATTGAGAAAATCGTCCAGAGGATTCGTGAATCTTCTGGTTCAGTCATCAATCTCACTGACTTGGTTTTCTACTTGATAAGTTGTACTGTGTACAGGGCTGCTTTTGGAAACTCCACCATGGACCATGGTGAGTTTATTGTTCTGATCAAACAAGCAATGCAAATCTTGGGAGGGTTTAATTGGGCGGATTTGTTTCCTTCAATCAAAGGTCTGCATTATTTGAGTGGGTTGAAGTCCAAAGTGGAGTTGCTGCACAAGAAGCTTGATAGGTTCATGGAGGCGATCATAAAGGAACATCAAGAGAAGCAAAGAGAAGGTAGGACCGATGTGGAAGACGAAGACCTTGTTGATGTTCTTTTGAGAGTCCAGAAAAGTAACAATCTTGAGACCAACCTAACAATCACACACGTCAAAGCTGTCCTTGGGGACATATTTGCTGCTGGAATGGATACCACCGGAGCTACACTAGAATGGGCCATGTCAGAAATGGTAAAGAACCCAAGAGTCATGAAAAAGTTACAAGCTGAATTAAGACAAGCATTAAAAGGAAAGAAAGAAATTCACGAAAGTGATATTGAAGAACTAAGTTACCTCAAGCTAGTGGTGAAAGAGGTACTAAGGTTGCACTGTCCCACTCCATTGTTGATCCCTAGAGAATGCACTGAAGAAACCAACATTCATGGCTATGATATACCAGTCAAGAGCAGAGTGATGGTGAATGTGTGGGCAATTGCAAGAGATCCACAATACTGGGATGATGCTGAGAGTTTTATACCAGAGAGGTTTGAAGATAGTTCTTTGGATTTCAAAGGGAACAACTTTGAGTATTTACCATTTGGGGCAGGAAGGAGAATCTGCCCTGGCATGAATTTTGGCGTGGCTGGACTTACACTTCCTTTGGCAATGTTAATGTACCATTTCAATTGGGAACTCCCCCATGGAATGAAGACTGAGGATCTGGACATGACTGAAGTCCCTGGCTTGGCTATTGCAAGAAAAATTCCCTTGCGTGTCATTCCCACTGTTTATGATCCATCACTTCATCATGATATTTAA 1542 0.4293 MEEAQPSQPSSLLIPTFFLLLAFSFLTKYYKSKTRPNQKLPPGPWKLPIIGNFHQVAKAGPLPHRAFRELAKKHGPIMHLKLGENSTVVISSPKLAKEVLKTYDGSFQKRPIIAAVPTITYGPSDIVFSPSGDYWRDMRKICTLELLSKKRVQSLAHVREAEIEKIVQRIRESSGSVINLTDLVFYLISCTVYRAAFGNSTMDHGEFIVLIKQAMQILGGFNWADLFPSIKGLHYLSGLKSKVELLHKKLDRFMEAIIKEHQEKQREGRTDVEDEDLVDVLLRVQKSNNLETNLTITHVKAVLGDIFAAGMDTTGATLEWAMSEMVKNPRVMKKLQAELRQALKGKKEIHESDIEELSYLKLVVKEVLRLHCPTPLLIPRECTEETNIHGYDIPVKSRVMVNVWAIARDPQYWDDAESFIPERFEDSSLDFKGNNFEYLPFGAGRRICPGMNFGVAGLTLPLAMLMYHFNWELPHGMKTEDLDMTEVPGLAIARKIPLRVIPTVYDPSLHHDI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182230g00001 513 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 Coils Coil 332 352 - -
Stsc182230g00001 513 Pfam Cytochrome P450 41 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Stsc182230g00001 513 Gene3D Cytochrome P450 33 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 PANTHER OS08G0105600 PROTEIN 66 507 - -
Stsc182230g00001 513 CDD CYP71-like 73 498 - -
Stsc182230g00001 513 SUPERFAMILY Cytochrome P450 41 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc182230g00001 513 FunFam Cytochrome P450 71D8 33 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182230g00001 Stsc-Chr182230 3323 7003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182230g00001 19 507 Cytochrome P450 AT3G26300 43.400 7.66e-145 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182230g00001 - K15472 aprc:113870280 598.586