Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182217g00003 ATGTCTGGTGATGGTGTTGGTGTTGGTGTTGTTGGTACCAACATTAATGATCTTGGTGCTAGTTTACTCATAACTAGCAACAAGTACAGGTACAGCAAGATTTGGCGTAGAACCAAATATGTTGGAATTCTCATCTTTCTCAAGAAATCAACACCATACACTTCATTGCCTCCTGCTAGATCCTCCTCTTCCAAATCATACCATGAAATTGACATAGCCTCTGATTCTGTTCAAGAGGACAAAGTAGAACATGATGACCCTCTCTCCTCACCGCTTCCTGCTCAACACACTGAGGAACAGGAGGGCCTTAGGCACTGTAAGGTGTTGCCAGGGCATGATGGAACAAGCTTCTCTATGTATTTGTTGGATTGCTGCAAACACAACAGTTACACAATTTCAGTGCTGTTATGCTCAGCTGGTTTGTCCTTCGCCACGGAATTCAAGCAGGAGGGGCCTAAATATGGTTGGCATGATGGTGTTGCCATAGTATTTGCTGTTATTCTGATGGTTGCATTCCCTTCCATAACAAACTATTGGCGCGGAAGAAAGATGATGAGATTGTCAAAGAGACAGGCAGGCTTGTTGGAGAGGCGAATCGAGAAGCCAATCACTTACATAGACAAATTTGTTCTTTTTGTCTCAGCATTAGTTGCTCTTGTGGCGCTCATTCGCGTGATCTGCAAATCAAATGGGGACAGTGATGGTGATTTGCCAGACCTCAAGGGAAATGTTTCAGTTGGTTTGGTGATGGAAGTCCTTAAGAGAACCTTTTTGAGGCCATATGGAAGGATTTCCATCTTAACAGGTCTTGTTACTGTTGTAGTACTATGTGTGCAACATGGAATGCCACTTATGGTCACAGTTTCTCTCTATTATCAGAAGGTAGTGTCCAGAAAAGATGCAGTCCTCAATGATTTATCAGCTTGTACAACAATGGGGCTAGTTACTGTCATCTGCATCGATGTATCTGGCGGATTGGCATCTGAGCCGATGAAAGTTAGCCGAGTTTGGATGGGGGAGAAAGATATCAGCAAGGTTGAGGAATCAGAAGTTGATCAAGTTGTTCTTGGTATGCTTCAACAGGGAGTTGTTTTATCTGTGGCTCCAGAGCTTCAGCTTTCTCCAATATCAAGTTCACTGATTTCTTGGGCTGAAACAACTTGGGGAATAAAAAGAGAGTCTTTTACAAAGGAATTTGACACTCTTGAGCACAGAAAACTGGATTCTGGCAAAGAAGGCAGTGGAGTTTTGTTGAAAAATGTTGGTGAGAATGATCAAAATCTGCACTTGCACTGGAGTGGTGATGCATCCTTGGTATTGGATATGTGTTCACTATACTATGATTGCAAAGGGGAATGCCACACCATAGGGAATAAGAAAATCAGATTTGAAGAAGTGATTAAGGAGATGGAAAATAGTGGTCTGAAGCCAATTGCATTTGCTCATAAACAAACTACTGTGCAAAAACTTGAAAAAGATGGACTGATATTGTTAGGATTGATAGGTCTCAAACACACATGTCAAGAACCCACAAAACTAGTAATCGAAGAGCTCGGAGAAGCTGGAATAAGCATCATATTGGTATCAGAGGATGCGATTGTGGTAGTGAAGGACATAGCTCAGGAACTAGGAATTGAACTGACAGCAAATGACATTTTTCTTGAAGGAAAAGAACTTCAAGATTTGAATGGAAGTGCTTGCATGGATAAGGTGGATCTAGCTCGTATAATGGGAAGTTTTTGCCCTGAAGACAAGATTCTCATGGTACAGTGCTTGCAAAAAAAGGGTCATGTGGTTGCATTTGTTGGAAAAAGGAACCATAGCCATAGTTCAGTTCTGCAGGTAGCTGATGTAGGAATAATCCATGATTCTCTGCTAGGCACAGTAATGGACACAGATAGTTCTGGACTAACCATCAAATGTTTCAGTGCATTGAAGCCAATTGTTATTGCTGGTAGAAATAACTACAGAAACATTCAGAAGTTCATTCAACTTCTACTCACCTTTAGCATATCAGGTTCACTCATAACCTTGATTACTACAATCTCCATGGGAGAATCACCCTTAACAGCATTCCAATTGATTTGGGTGAATTTTATAATGTGTCTTCTTGGTGGCCTAATGATGGTAATGGAGTTGAGTTGTGAGGAGAAGCTTCTTGCTATTCAATCATCAAGTAGGAATCAATCAGTTATAACAAGAGAATTCTTCAAGAGCATAGCTGTTCAGGTTTTGTATCAGACTTTGGTAACGGTGATGCTCGAATTCAGTGGCCATAGAACTAATGAAGAGAAGGAGGTGCTGGTGATTGAGTATGCAAAATGCCTAGCATATTGCATGAGGCTGAATGTTCCACACTGGGCTATCTGTGTCCTGGTTGGTTTCTCTTCATGTGCATTTGAATGGAGCCTGAAGAAGCTAGCAGTGATTCTTATCACCAATAATGGTTCAGAAACAGCAAGTTCTTCATCCTTTGGGTTGGTTAATTGGTCACATTGGTTTTATCTCCCTTTGGGATTTCCATTTCTGATGTTGCTTTTCTTCCCTCACCAAATGGACCAGATACTTAGATAG 2574 0.413 MSGDGVGVGVVGTNINDLGASLLITSNKYRYSKIWRRTKYVGILIFLKKSTPYTSLPPARSSSSKSYHEIDIASDSVQEDKVEHDDPLSSPLPAQHTEEQEGLRHCKVLPGHDGTSFSMYLLDCCKHNSYTISVLLCSAGLSFATEFKQEGPKYGWHDGVAIVFAVILMVAFPSITNYWRGRKMMRLSKRQAGLLERRIEKPITYIDKFVLFVSALVALVALIRVICKSNGDSDGDLPDLKGNVSVGLVMEVLKRTFLRPYGRISILTGLVTVVVLCVQHGMPLMVTVSLYYQKVVSRKDAVLNDLSACTTMGLVTVICIDVSGGLASEPMKVSRVWMGEKDISKVEESEVDQVVLGMLQQGVVLSVAPELQLSPISSSLISWAETTWGIKRESFTKEFDTLEHRKLDSGKEGSGVLLKNVGENDQNLHLHWSGDASLVLDMCSLYYDCKGECHTIGNKKIRFEEVIKEMENSGLKPIAFAHKQTTVQKLEKDGLILLGLIGLKHTCQEPTKLVIEELGEAGISIILVSEDAIVVVKDIAQELGIELTANDIFLEGKELQDLNGSACMDKVDLARIMGSFCPEDKILMVQCLQKKGHVVAFVGKRNHSHSSVLQVADVGIIHDSLLGTVMDTDSSGLTIKCFSALKPIVIAGRNNYRNIQKFIQLLLTFSISGSLITLITTISMGESPLTAFQLIWVNFIMCLLGGLMMVMELSCEEKLLAIQSSSRNQSVITREFFKSIAVQVLYQTLVTVMLEFSGHRTNEEKEVLVIEYAKCLAYCMRLNVPHWAICVLVGFSSCAFEWSLKKLAVILITNNGSETASSSSFGLVNWSHWFYLPLGFPFLMLLFFPHQMDQILR 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182217g00003 857 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 417 503 IPR023299 GO:0000166
Stsc182217g00003 857 Gene3D - 499 639 IPR023214 -
Stsc182217g00003 857 Gene3D - 126 329 - -
Stsc182217g00003 857 Pfam Cation transporting ATPase, C-terminus 687 835 IPR006068 -
Stsc182217g00003 857 Gene3D - 640 774 - -
Stsc182217g00003 857 SUPERFAMILY HAD-like 495 621 IPR036412 -
Stsc182217g00003 857 SUPERFAMILY Calcium ATPase, transmembrane domain M 109 808 IPR023298 -
Stsc182217g00003 857 Gene3D - 348 498 IPR023299 GO:0000166
Stsc182217g00003 857 PANTHER CATION TRANSPORTING ATPASE 114 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182217g00003 Stsc-Chr182217 5812 8761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182217g00003 280 758 Primary Pumps ATPases AT3G63380 36.473 5.22e-85 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182217g00003 K01537 - gmx:102661547 632.869