Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182217g00002 ATGGCCACCTCTGCCGTCCAGCAATCTGCATTCGCCGGCCAAACTGCCTTGAAGCAAGGAAATGAGCTTCTCCGCAAGACTGGTGGCGCCGGCAAAAGCCGCTTTAGCATGCGCCGTACAGTGAAGAGTGCTCCTCAAAGCATCTGGTATGGCCCTGACCGTCCTAAGTACTTGGGACCATTCTCTGACCAAATTCCCTCATACTTGACCGGAGAATTCCCCGGTGACTACGGGTGGGACACTGCCGGATTATCCGCTGACCCCGAGACCTTTGCAAGGAACCGTGAGCTGGAAGTTATTCACAGCAGATGGGCCATGCTTGGTGCACTTGGATGCACATTCCCAGAAATCCTTGAAAAGAATGGTGTCAAGTTTGGCTACAGAGTTGGTGGAGGACCTCTTGGTGAAGGACTAGACCCAATTTACCCTGGTGGTGCCTTTGATCCTCTTGGTTTGGCCGATGACCCCGAGGCATTCGCCGAGTTGAAGGTGAAGGAACTCAAGAATGGCAGGCTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTGACTGGCAAGGGACCTATTCAGAACCTGTTTGACCATGTTGCTGACCCTGTTGCCAACAATGCGTGGGCTTATGCCACTAACTTTGTCCCTGGACAATAA 657 0.5236 MATSAVQQSAFAGQTALKQGNELLRKTGGAGKSRFSMRRTVKSAPQSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLFDHVADPVANNAWAYATNFVPGQ 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182217g00002 218 SUPERFAMILY Chlorophyll a-b binding protein 48 215 - -
Stsc182217g00002 218 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 126 217 IPR001344 GO:0009765|GO:0016020
Stsc182217g00002 218 Gene3D Chlorophyll a/b binding protein domain 56 127 - -
Stsc182217g00002 218 Gene3D Chlorophyll a/b binding protein domain 128 211 - -
Stsc182217g00002 218 Pfam Chlorophyll A-B binding protein 136 184 IPR022796 -
Stsc182217g00002 218 Pfam Chlorophyll A-B binding protein 66 122 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182217g00002 Stsc-Chr182217 3618 4758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182217g00002 1 218 Chloroplast and Mitochondria Gene Families AT2G05070 70.566 3.62e-134 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182217g00002 K08913 - gmx:100793702 414.846