Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182213g00002 ATGTTGGCGTTGTGGAGAAAGATCCAACTGCGCGATATGTTCGGATATAAGGCGTTTGATGAAGTAGATGGAATAGAAGTGGCGTGGAACCAAGTCGACGTTGAGGATTTTTTGCAGTCACCGCAACAATTGGAAAGATTGTACTCTGAGGTTCATTTCCTCAAGTCATTGAAACATGAGAATATCATCAAATTCTACAATTCTTGGGTCGATGAAAAGACCCGGACTATCAACATCATCACTGAGTTGTTTACCTCCGGGAGTTTGAGGCAATATAGAAAGAAACACAAGAATATTGATATCAAAGCCATGAAGAACTGGTCGCGGCAGATTCTTCAAGGATTATGCTATCTGCATAGCCATAATCCTCCCATAATTCATAGGGATCTGAAATGTGATAACATTTTTGTCAACGGTAATAATGGACGTGTTAAGATTGGAGATCTTGGATTGGCAGTTGTGATGCAGCAGCCTCTTGCTCACAGTGTTATAGGCACACCGGAATTTATGGCGCCGGAGCTTTATGAAGAACAATACAATGAACTTGTCGACATATATTCTTTTGGCATGTGTTTGTTGGAAATGGTCACTTGTGAATACCCATATAGTGAATGTAGAAATCCAGCACAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCCGCCCTTGCTAAAGTAAATAATTTGAAATTGAGAGAATTTATTGAGAAGTGTCTAGTTCCAGCATCTATGCGACCTTCGGCATCTGAACTATTGAAAGATCCATTCCTTGTTGCTGAAAGCCCGAAGGAGATCAATCATGATACGCGACTGCAGCTGACTAATCTGCCAATATCTGAGCCTTATCCCATGGAGATAGACTCAAGCTCCTGGCATACTTCACATGGTTCCTCTGTGAAAAGAATGGAAGAAACTTCTCTAGTTTCAGTATTTGATCTTCTGCAGGAGACTGAGAAAAATGAATTCAGGTTAAGAGGAGAGAAAACTGCTGGCGGTACATTTTCACTTACCCTGCGAATTGCCGATGCACATGGTCGAGCAAGGAATATCCATTTTCCGTTTTATGTCCATTCTGACACAGCAATTTCAATTGCTGTGGAGATGGTTGAACACCTGGGACTTGCGAATGACGATGTAACTGTCATTGCTGAGCTAATACACAACATGATTCTGAAGCTCACGTCCAACACGAAACCATCCTCTTATAACCTCTCATCTGGAGGAGGTCACTTGTACAAGCCTTCGGAAGATCTTCAGAGCCAGGGAACATCAAGTTGCCAGTCGCCATCCCTATCAAGTGCATTTGATAGAAAAGCAATTCAAGATGATTATGTTCACTTACATGATGATGGAGAAGATCATTGTAAACAAGAATCTGTTATGTCAGAGATTTCATCAGAGTATGGGACTGCACTTGCTTTGGATTCTAAGAGTGAAGAGCATGACATTTTTAGTATGGACGGATGCTGCAAAGGTTCCAATGGCTTCATTACCAATTCAGATGCCAGATTCTGTGCTCATGATGATAATGAACAAAAGAATGATGTTGACCAATCAGAGAACTCAGCAGGCATTTTAATCAATTCACATTGCAGTGCATTCGAAAACTTTGACGTGTCAAACATATGTTCCCTTACTCTAGGCGACATAGATAATTCAACCGATCTGCAGCTGGAGCTTGATGCAATAGAAACACAGTATCACCAATGTTTTCGCGAGCTCGTGAAGATGAGGGAGGACGCCATAGAAAACGCCAAAAGGAGGTGGATAACAAGGAAGAAAATATCAGTTATGTGA 1800 0.4128 MLALWRKIQLRDMFGYKAFDEVDGIEVAWNQVDVEDFLQSPQQLERLYSEVHFLKSLKHENIIKFYNSWVDEKTRTINIITELFTSGSLRQYRKKHKNIDIKAMKNWSRQILQGLCYLHSHNPPIIHRDLKCDNIFVNGNNGRVKIGDLGLAVVMQQPLAHSVIGTPEFMAPELYEEQYNELVDIYSFGMCLLEMVTCEYPYSECRNPAQIYKKVTSGIKPAALAKVNNLKLREFIEKCLVPASMRPSASELLKDPFLVAESPKEINHDTRLQLTNLPISEPYPMEIDSSSWHTSHGSSVKRMEETSLVSVFDLLQETEKNEFRLRGEKTAGGTFSLTLRIADAHGRARNIHFPFYVHSDTAISIAVEMVEHLGLANDDVTVIAELIHNMILKLTSNTKPSSYNLSSGGGHLYKPSEDLQSQGTSSCQSPSLSSAFDRKAIQDDYVHLHDDGEDHCKQESVMSEISSEYGTALALDSKSEEHDIFSMDGCCKGSNGFITNSDARFCAHDDNEQKNDVDQSENSAGILINSHCSAFENFDVSNICSLTLGDIDNSTDLQLELDAIETQYHQCFRELVKMREDAIENAKRRWITRKKISVM 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182213g00002 599 SMART serkin_6 8 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182213g00002 599 Pfam Protein kinase domain 16 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182213g00002 599 CDD STKc_WNK 16 258 - -
Stsc182213g00002 599 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182213g00002 599 Gene3D - 333 417 - -
Stsc182213g00002 599 FunFam Probable serine/threonine-protein kinase WNK1 10 82 - -
Stsc182213g00002 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc182213g00002 599 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 336 391 IPR024678 GO:0004674|GO:0005524
Stsc182213g00002 599 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 491 - -
Stsc182213g00002 599 FunFam probable serine/threonine-protein kinase WNK9 84 263 - -
Stsc182213g00002 599 Gene3D Phosphorylase Kinase; domain 1 14 82 - -
Stsc182213g00002 599 Gene3D Transferase(Phosphotransferase) domain 1 84 264 - -
Stsc182213g00002 599 MobiDBLite consensus disorder prediction 405 428 - -
Stsc182213g00002 599 SUPERFAMILY Protein kinase-like (PK-like) 16 294 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182213g00002 Stsc-Chr182213 6873 10551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182213g00002 6 598 MAP Kinase Kinase Kinase AT5G41990 49.834 1.22e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc182213g00002 Pkinase 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182213g00002 K08867 - gmx:100783717 756.903