Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182206g00002 ATGGGAAAAGGCAAGGAGAAGGAGCTTCAGCATCAGGTACCTATTTGGGGGCTAGAAAATAATAATAATAATAATAATAATAATAATGAAGAAAACAAGAAATGGATGCATAGAGAGACAGAAAGACAAAGAAGGCAAGAGATGGGGATGCTTTGTGCCACTCTTAGATCTCTTCTACCTTTAGAATATATTAAGGGAAAGAGGTCAACTTCTGATCACATGTATGAGGCTGTGAATTACATAAACCAGCTTCAAAAAAAGGTGAAGAAGCTGGAAGCTAAGAGGGATGAATTAAAGAAGCATTTTTCTGATCTGAATAATGCAATTGATGATGATGATGATGAAGATGAAAGTATGTTACATCTTCCACCCTATGTTGTTGTTCATTCATTGCATGGAGGAGGAGTCTTATTAGGAGGTGTTGAGATTATTTGCAGTTACAGCTTGAAGAAGTGTTTGTGTCCATTGTCAAGGTTGCTACACATTCTTATTGGTGAAGGGCTTAACATAATCAACACTATTTCAACCAAAAGAAATGGAAGATTCATACACACTATCCATTCACAGGATCCAAATATGAGTAGTGGTGCTGATTACTCTGAGCTGCAAAGAAAGCTTACAGAAGCAATATCATCTTCTTCTTCTTCAAGCTTGTTACAACAGAACTTTGATTGGACCTGA 681 0.3671 MGKGKEKELQHQVPIWGLENNNNNNNNNNEENKKWMHRETERQRRQEMGMLCATLRSLLPLEYIKGKRSTSDHMYEAVNYINQLQKKVKKLEAKRDELKKHFSDLNNAIDDDDDEDESMLHLPPYVVVHSLHGGGVLLGGVEIICSYSLKKCLCPLSRLLHILIGEGLNIINTISTKRNGRFIHTIHSQDPNMSSGADYSELQRKLTEAISSSSSSSLLQQNFDWT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182206g00002 226 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 22 209 - -
Stsc182206g00002 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 104 IPR036638 GO:0046983
Stsc182206g00002 226 Coils Coil 74 108 - -
Stsc182206g00002 226 SMART finulus 38 90 IPR011598 GO:0046983
Stsc182206g00002 226 MobiDBLite consensus disorder prediction 17 38 - -
Stsc182206g00002 226 CDD bHLH_AtORG2_like 33 100 - -
Stsc182206g00002 226 FunFam Transcription factor bHLH126 24 112 - -
Stsc182206g00002 226 Gene3D - 22 113 IPR036638 GO:0046983
Stsc182206g00002 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 84 IPR011598 GO:0046983
Stsc182206g00002 226 Pfam Helix-loop-helix DNA-binding domain 34 85 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182206g00002 Stsc-Chr182206 20565 21928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182206g00002 27 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.541 3.67e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc182206g00002 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182206g00002 - - ahf:112751692 325.094