Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182192g00002 ATGGCAAATAACAATAATGCAACACTCTTACTTGAGATGAAGGATGTTGAGATCATCAAACCTTCCAAGCCAACACCTTCTTGTATTCTTTCTCTATCAAGTATTGACAACAATCCTCAGCTCAACATTCTCTGTCATATCATCTATGCATACCAAGCAAATCTTGATGATGACCCAAAAGGCCAATTATTATCAGATCCTTCTTATGTGATAAAACAAGGTCTTTCAAAGGCTTTGGTTTACTATTATCCTCTTGCAGGGAAGATTATAACAAATGGTGGTGATGGAAGGCTTGGAATCAATTGCAATAGTGCTGATGATGGAGTTCCATTCTTGGAGGCAAATGCTAATTGTGAACTCTCTTCTCTTAACTATCTTGAAGGGATTGATGTTCCAACAGCACAGAAATTGGCGTTTGATTATGATGACAACCATTCACTTCTTCATCATCATCATGATGATCAAACTAGTCAACACCCCTTGGTTTTCAAGGTGACAAAGTTTCTTTGTGGTGGTTTCACAATTGGAATGGGGTTGTCACATGCAGTTTGTGACGGTTTTGGTGCATCGCAATTCTTTAGAGCTGTTGCTGAACTCGCAAGTGGGAAAAGTGAGCCTTCTCTTAAACCTGTCTGGGAGAGGGAGAGACTAATTGGAACAGTTCTCAAGCATCCACTGAAATTTCCCATAGATAAAACTTCAATGGCTGTTTCACCATTTTGGCCATCTAATGAGCTTTCACATGAATGCTTTCACTTCAATGGTGAGAGCATAAAAAGGCTCAAAATGGAATTGATGAAGGAAAGTAGTGATAATAATAATGGTAAGGAAAGCTTCACAACTCTTGAAGCACTTGGTGCCTATGTTTGGAGGTCAAAGGCTAGAGCTATGGAATTGAGCAGTGATGGGAAAACTTTGTTGTGTTTAGCAGTTGGTGTGAGGCACCTATTGGATCCACCTTTGCCAGAAGGGTATTATGGGAATGCTTTTGTGAATTCAAATCTGGTCCTAACAGTGAAGGAACTCAATGAGAAACCACTCTCAGAGGTTGTGAAGCTCATCAAGGAAAGCAAGAAACAACCTTGTAATATGGAGTACATAAGAAGCAACATCAACATGTTGGAGACAATGAGGAAATTTAACATTAGGATTGGTGGTTTAGGAGCACCAATGGTAATAACAGATTGGAGGCGATTGGAATTGTTGGATGAAGTGAATTTTGGATGGAAAACAGTTAATATGATACCTCTCCCATGGAACATGTTTGGCTATGTGGATTTGGCCCTTTTCCTGCCTCCTAGTAACTTTGATCCTTCAATGAAAGGAGGTGTTAGAGTCTATGTTTCCCTTCCAAAAGCTTCCATGCCCAAGTTCAAGGAGGAGATGGAGGCTCTCAAGTTTATCAAGGATGAAGAAAGCAAGGTTGTCAAACTAGAGACTTGA 1443 0.3999 MANNNNATLLLEMKDVEIIKPSKPTPSCILSLSSIDNNPQLNILCHIIYAYQANLDDDPKGQLLSDPSYVIKQGLSKALVYYYPLAGKIITNGGDGRLGINCNSADDGVPFLEANANCELSSLNYLEGIDVPTAQKLAFDYDDNHSLLHHHHDDQTSQHPLVFKVTKFLCGGFTIGMGLSHAVCDGFGASQFFRAVAELASGKSEPSLKPVWERERLIGTVLKHPLKFPIDKTSMAVSPFWPSNELSHECFHFNGESIKRLKMELMKESSDNNNGKESFTTLEALGAYVWRSKARAMELSSDGKTLLCLAVGVRHLLDPPLPEGYYGNAFVNSNLVLTVKELNEKPLSEVVKLIKESKKQPCNMEYIRSNINMLETMRKFNIRIGGLGAPMVITDWRRLELLDEVNFGWKTVNMIPLPWNMFGYVDLALFLPPSNFDPSMKGGVRVYVSLPKASMPKFKEEMEALKFIKDEESKVVKLET 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182192g00002 480 Gene3D - 234 462 IPR023213 -
Stsc182192g00002 480 PANTHER ACYL TRANSFERASE 4 12 463 - -
Stsc182192g00002 480 Gene3D - 8 226 IPR023213 -
Stsc182192g00002 480 Pfam Transferase family 11 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182192g00002 Stsc-Chr182192 1568 3766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182192g00002 11 460 Monolignol Biosynthesis Gene Families AT5G48930 27.609 1.60e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182192g00002 K20240 - gmx:100801843 676.781