Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182189g00002 ATGGAATCTTCTGCCACTTCACCCACCGGAAATAGCAGCTTCACTGGTTCTACAATTCGCAGTATCGGAGAAGACGTTGAATCTCTCATTGATATACTGGAATGCACACTTGATGTTGGGATTGATGATGTTGAAGTTAGTGAAATGCCCACTGATGAGGACCGGGAAATTGAAGCTCCAGAAGCCCCAAATGTGGGGGCGCATGTTACGGGATCGTATGTCTCTCCGACCCTTGCCCAGGTCTTTGCAATGGAATTTGATTGTCCGGAAGCTGCGTTTCGTTTTTATGAACAATATAGCAGGGGCAAGGGTTTTTCGATGAGACACGGTAGGAGTGTTAAGAACAAGAATGGTGAAATTGTGCGTTACACTCTGTGTAACCGACAGGGGTTTAGGGAGAAGAAATGGCTCAAAATGCCGAAAAGGAAGAGAGAGCACAAGGTTGTGACAAGGTGTGGTTGCCCTGCTGAGTTGCGCATAAAGCCAAAAGAGGGAACCAGTGGTTGGTATGTTTCTTGA 519 0.4663 MESSATSPTGNSSFTGSTIRSIGEDVESLIDILECTLDVGIDDVEVSEMPTDEDREIEAPEAPNVGAHVTGSYVSPTLAQVFAMEFDCPEAAFRFYEQYSRGKGFSMRHGRSVKNKNGEIVRYTLCNRQGFREKKWLKMPKRKREHKVVTRCGCPAELRIKPKEGTSGWYVS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182189g00002 172 Pfam FAR1 DNA-binding domain 94 171 IPR004330 -
Stsc182189g00002 172 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 39 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182189g00002 Stsc-Chr182189 20554 22592 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc182189g00002 FAR1 4.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182189g00002 - - aip:107647209 148.673