Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182179g00004 ATGAGTGATGTTGACACATTAGTTTCAGCTGATGAAACCTTTGCATTGGGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTATGTTGGAATTTGGTATAACAAAGATCCAACAAACGCAATAGTATGGGTTGCAAACAGAGAAAAACCCCTCACTCACTCATCAGGGATTTTGAAGGTCAACAGCACTGGAATTCTAGTCCTTCTTGATAGTAATAATACTCTCATCTGGTCATCCAACACAACACAGTCCGCACGAAATCCGGTTGCAAAGCTTTTGAATTCTGGGAACTTTGTTGTGCAGGATGACAGCAATAGCAACAGTGATTTTCTGTGGCAAAGTTTTGATTATCCAGGGGACACAATCTTGCCTGGACAGAAGTTTGGAAGAAACTTAACTACAGGACTGAATTGGTTGATAACATCATGGAAAAGCTCTGATGATCCTTCTCAGGGTAGCTTTAGCTATCAATTTGATATTGATGGATATCCACAATTAGTATTAAGAGAAGGCACGGCGAAAAGATTTCGGTTTGGATCATGGAATGGTATTCAGTTTAGTGGGGGACCACAGTTGAAAAATGACTCTACATTTAGATTTATCATGATTTCTAATGAGAAAGAAGTATATTATGTATATTGGCTTGCTGATAGTTCAGTGCATCAAAGGCTGCAGGTAACATCGGACGGATTCAGCCACCGGATGAGTTGGAGTGATGGAAACTCAGATGGGTTTGTGAAGTTTTCGGGGCTAAAATTACCAGACACTGAAGGGACACGGTTTAACAGAAGTATGAGGCTTGAGGATTGTAGGATCTTGTGCTTGAACAATGGCTCTTGTATGGCTTATGCAGCTTTGGATGTTAGCAAAGGGCCAAATGGTTGTTTACTTTGGTTTGGTAATTTGATTGATATGAAAGTGTTGAGCGCATCAGATGAAGATATTTATATAAGGATGGCAGGGAAAGATGTAGAAGCTATTGAACAAAGTAGATCACAGAAGTCCAAGAAACGGAAGCGAAAGATTATCATTGCTGTAAGCTGTGTGTTGTCCTTTGGAATTTTGATCCTATGCTTGGCCTTCATTATCTATAGATGGAAGATGAATCAGAAAGGTAAGATAAAAGAAGAAAGTGAATCAGGTGCAATAAATAGTCACAACCATGATGAGAATGATCTGGAACTGCCCTTATTTGATATGTGCACAATTACTTCTGCAACAAGTAATTTCTCAAGTGATAATATACTAGGGACAGGTGGTTTTGGATCAGTTTATAAGGGTGTCTTGGAAGATGGAAGGGAAATAGCTGTCAAGAGACTTTCTGAGAATTCAAGCCAAGGACTCCAAGAGTTCAAAAATGAAGTTATGCATGTTGCCAAACTTCAGCACCGAAATCTGGTGAAGCTCTTAGGGTGCTGCATTCAAGCAGGGGAGAGAATGTTGGTTTATGAATTTATGCGCAACAAAAGCTTGGACTACTTCATATTTGATAGTGACAGGGGGAAGCTATTAGGCTGGCCAAAACGGTTCCTTATCATCAATGGGATTGCTAGAGGTCTCCTGTATCTTCATCAAGATTCAAGGCACAGAATAGTTCATAGAGATCTTAAGGCCGGAAATGTTTTGTTAGATGATGAGTTGAATCCTAGAATCTCAGACTTCGGACTAGCAAGAAGCTTCGTTGGAAATGAAAACGAAACAAACACAAAACATATTGTTGGAACTTATGGTTATCTGTCACCCGAGTACATAGTCGACGGGATATACTCAACAAAATCCGATGTCTATAGCTTCGGAGTATTGGTGTTAGAGATAGTTAGCGGAAAGAGAAACAGAGGATTCATTCATATTGATCACAACTTTAATCTTCTTGGGCATGCATGGACACTTTTCACAGAAGGCAAGTGCTTAGAACTAGTCGATGCATCGATTAAAGACTCGATCGATTTGCCAGAAGTGCTAAGATCAATTCATGTTGGTCTACTATGTGTGCAACGAAATCCAGAAGATCGGCCAAGCATGTCTTATGTGCTTATGATGCTGAGTAGTGAGTGGGCATTGCCTGAGCCAAAGAAGCCAGGGTTCTTCATTGAGAGAGATGTGGTTGGTGAGAATTCTTCGTCAAGCAACAATAAACTATTATTATCGGTTAATGATCTCACAGTTACTCAAGTCTGTCCAAGATAG 2187 0.4015 MSDVDTLVSADETFALGFFSPGTSKNRYVGIWYNKDPTNAIVWVANREKPLTHSSGILKVNSTGILVLLDSNNTLIWSSNTTQSARNPVAKLLNSGNFVVQDDSNSNSDFLWQSFDYPGDTILPGQKFGRNLTTGLNWLITSWKSSDDPSQGSFSYQFDIDGYPQLVLREGTAKRFRFGSWNGIQFSGGPQLKNDSTFRFIMISNEKEVYYVYWLADSSVHQRLQVTSDGFSHRMSWSDGNSDGFVKFSGLKLPDTEGTRFNRSMRLEDCRILCLNNGSCMAYAALDVSKGPNGCLLWFGNLIDMKVLSASDEDIYIRMAGKDVEAIEQSRSQKSKKRKRKIIIAVSCVLSFGILILCLAFIIYRWKMNQKGKIKEESESGAINSHNHDENDLELPLFDMCTITSATSNFSSDNILGTGGFGSVYKGVLEDGREIAVKRLSENSSQGLQEFKNEVMHVAKLQHRNLVKLLGCCIQAGERMLVYEFMRNKSLDYFIFDSDRGKLLGWPKRFLIINGIARGLLYLHQDSRHRIVHRDLKAGNVLLDDELNPRISDFGLARSFVGNENETNTKHIVGTYGYLSPEYIVDGIYSTKSDVYSFGVLVLEIVSGKRNRGFIHIDHNFNLLGHAWTLFTEGKCLELVDASIKDSIDLPEVLRSIHVGLLCVQRNPEDRPSMSYVLMMLSSEWALPEPKKPGFFIERDVVGENSSSSNNKLLLSVNDLTVTQVCPR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182179g00004 728 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 486 689 - -
Stsc182179g00004 728 Pfam PAN-like domain 241 305 IPR003609 -
Stsc182179g00004 728 CDD STKc_IRAK 416 681 - -
Stsc182179g00004 728 Pfam S-locus glycoprotein domain 176 242 IPR000858 GO:0048544
Stsc182179g00004 728 Gene3D Phosphorylase Kinase; domain 1 383 485 - -
Stsc182179g00004 728 SUPERFAMILY Protein kinase-like (PK-like) 388 681 IPR011009 -
Stsc182179g00004 728 PIRSF SRK 1 242 IPR024171 GO:0004674
Stsc182179g00004 728 PIRSF SRK 228 728 IPR024171 GO:0004674
Stsc182179g00004 728 Pfam D-mannose binding lectin 41 144 IPR001480 -
Stsc182179g00004 728 SMART blect_4 2 118 IPR001480 -
Stsc182179g00004 728 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 374 485 - -
Stsc182179g00004 728 SMART serkin_6 410 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182179g00004 728 Gene3D Hepatocyte Growth Factor 237 317 - -
Stsc182179g00004 728 SUPERFAMILY alpha-D-mannose-specific plant lectins 41 149 IPR036426 -
Stsc182179g00004 728 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 243 672 - -
Stsc182179g00004 728 ProSiteProfiles Protein kinase domain profile. 410 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182179g00004 728 Pfam Domain of unknown function (DUF3403) 682 728 IPR021820 GO:0004674
Stsc182179g00004 728 Gene3D Transferase(Phosphotransferase) domain 1 486 687 - -
Stsc182179g00004 728 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 115 - -
Stsc182179g00004 728 Gene3D - 1 115 IPR036426 -
Stsc182179g00004 728 ProSiteProfiles PAN/Apple domain profile. 238 320 IPR003609 -
Stsc182179g00004 728 CDD B_lectin 6 118 IPR001480 -
Stsc182179g00004 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Stsc182179g00004 728 SMART ntp_6 240 319 IPR003609 -
Stsc182179g00004 728 Pfam Protein tyrosine and serine/threonine kinase 413 679 IPR001245 GO:0004672|GO:0006468
Stsc182179g00004 728 ProSiteProfiles Bulb-type lectin domain profile. 1 113 IPR001480 -
Stsc182179g00004 728 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Stsc182179g00004 728 CDD PAN_AP_plant 238 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182179g00004 Stsc-Chr182179 16312 19310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182179g00004 353 728 Receptor kinase-like Gene Family AT3G45860 51.436 1.47e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc182179g00004 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182179g00004 - - gmx:100795006 927.932