Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182179g00001 ATGAAGTTGCATGTTGCCAAACTTCAGCACAGGAATTTAGTAAAGCTACTAGGATGCTGCATTCAAGCAGGGGAAAGATTGTTGGTTTATGAATTTATGCGCAACAAAAGCTTGAACTTTTTCATGTTTGATTGTGAGAAGGGAAAGCTACTAGACTGGCCGAAGCGTTTTCTTATCCTAAATGGGATCGCGAGAGGCCTTCTTTATCTCCATCAAGATTCAAGACATAGAATAGTTCACAGAGATCTCAAGGCAGGGAATATTTTGTTAGATGATGAATGGAACCCTAGAATCTCGGACTTTGGAATAGCAAGAAGCTTTGTAGGAAACGAAAACGGAGCTATAACAAGCCATATTGTTGGAACTTATGGCTATCTATCACCAGAGTACATGGTTAAAGGGCTGTACTCAACAAAATCCGACGTCTATAGCTTTGGTGTACTAGCACTAGAGATAGCTAGCGGAAAGAGAAATAGAGGATTCATCAATATTGATCAGAATCTTAATCTTCTTGGGCATGCATGGACACTCTTTGCAGAAGGAAAATGCTTAGAAATAGTGGATGCATCGATCAGAGAGTCGATTAAATTACCAGAAGTGATTAGAACAATTCATGTTGGTCTACTTTGCGTGCAACGGAATCCAGAAGATCGACCAAGCATGTCGCATGTGCTTACGATGCTGAGTAGTGAATACGCATTGCCTCAGCCAAAGAAGCCAGGGTTCTTCATTAAGAGAGATGTGGTTGGTGAGAATTCTTCATCAAGCAACAATCAAGTCTCAAGGTCAATCCACGATAGAATTTGGTTCAGAAGACAGTCCCAAAGCAAAGATGCTTTAAATGAAAGAGTGAACTACCCGGCCATGTCCATTTTCCAAACGACATCGCGCCCCTAA 897 0.4125 MKLHVAKLQHRNLVKLLGCCIQAGERLLVYEFMRNKSLNFFMFDCEKGKLLDWPKRFLILNGIARGLLYLHQDSRHRIVHRDLKAGNILLDDEWNPRISDFGIARSFVGNENGAITSHIVGTYGYLSPEYMVKGLYSTKSDVYSFGVLALEIASGKRNRGFINIDQNLNLLGHAWTLFAEGKCLEIVDASIRESIKLPEVIRTIHVGLLCVQRNPEDRPSMSHVLTMLSSEYALPQPKKPGFFIKRDVVGENSSSSNNQVSRSIHDRIWFRRQSQSKDALNERVNYPAMSIFQTTSRP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182179g00001 298 Gene3D Transferase(Phosphotransferase) domain 1 33 237 - -
Stsc182179g00001 298 PIRSF TyrPK_CSF1-R 203 291 - -
Stsc182179g00001 298 PIRSF TyrPK_CSF1-R 4 43 - -
Stsc182179g00001 298 PIRSF TyrPK_CSF1-R 57 160 - -
Stsc182179g00001 298 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 33 236 - -
Stsc182179g00001 298 SUPERFAMILY Protein kinase-like (PK-like) 6 240 IPR011009 -
Stsc182179g00001 298 SMART serkin_6 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182179g00001 298 Gene3D Phosphorylase Kinase; domain 1 3 32 - -
Stsc182179g00001 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Stsc182179g00001 298 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 259 - -
Stsc182179g00001 298 Pfam Protein tyrosine and serine/threonine kinase 6 227 IPR001245 GO:0004672|GO:0006468
Stsc182179g00001 298 ProSiteProfiles Protein kinase domain profile. 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182179g00001 Stsc-Chr182179 4038 5914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182179g00001 5 267 Receptor kinase-like Gene Family AT4G23150 51.866 3.73e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc182179g00001 PK_Tyr_Ser-Thr 3.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182179g00001 - - adu:107462379 449.514