LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc182172g00004	ATGCTCGGGGTTGACGACATGGATATCTTTAAAGGAATCAGCTTAAAACTCTTGGCCATGGAACAGTTGCTTCTACAACATCCTGACAAGAGGGGCAGAGTTGTTTTAGTCCAAATCGCGAACCCCGCTAGAGGCCGTGGGAAGGATGTACAGGAGGTCCAGAGTGAAACTTATGCCACAGTGAAAAGAATCAATAATACATTTGGAAGGCCTGGATACACACCTGTAATATTGATTGATACGCCGCTTCAGTTTTATGAGCGGATAGCTTATTATGTGATTGCTGAATGTTGCCTTGTTACAGCAGTGAGAGATGGTATGAACCTTATACCGTATGAGTACATCATTTGTAGACAAGGAAGTGAGAAGATAGATAAGATTCTAGGGACAAGCACATTTACCCAAAAGAAGAGCATGCTGGTGGTGTCTGAGTTCATTGGGTGCTCCCCATCATTAAGTGGTGCAATTAGAGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCAATGGATTCGGCACTCATAGTTCCAGAGTCTGAAAAACAGATGCGCCACGAGAAGCACTATAGGTATGTCAGTACTCATGATGTTGCATATTGGGCACGCAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGGGATCATCTGAGGAGGAGATGCTGGGGAATTGGCTTTGGTTTAGGATTTCGGGTTATTGCTTTGGATCCAAACTTTAGAAAACTGTCAGTGGAACATATTGTATCAGCTTATAAGAGGACCAAACACCGGGCCATTCTTTTGGATTATGATGGTACCATGATGCAGCCTGGTTCAATTAGTACAACACCTAGCAATGAAGCTGTTGCCATCTTGAACAGCTTGTGCAAGGACACCAAGAATTGTGTTTTCATTGTAAGTGGAAAGGAGAGAAAAACTCTTACTGACTGGTTTTCCTCTTGTCAAAGGCTTGGAGTTGCGGCAGAGCACGGTTATTTTGTGAGGACAAATCACAATGCAGACTGGGAAGAATGTGTTTCTGTGCCAGATTTCGACTGGAAGCAGATTGCCGAACCAGTAATGCAGTTGTACACGGAAACAACTGATGGTTCTAACATAGAGGCCAAAGAAACTGCTCTTGTTTGGAATTATGAGTTTGCCGACCGAGATTTCGGTTCATGCCAGGCTAAGGAGCTTCTGGATCATCTGGAAAGTGTTCTTGCTAATGAGCCTGTTTCTGTTAAAAGTAGTCCTCACATCGTGGAAGTCAAACCTCAGGGGGTGAGCAAGGGTATTGTCGCAGAACGTCTTCTCTTTACAATGCAACAAATGGAAGTGATTCCAGATTTTGTTCTATGCATTGGAGATGACAGATCAGACGAGGACATGTTTGGTGTAATAATGAATGCAAGGGAATCTCTGTCTCCGGTTGCCGAAGTGTTTCCTTGCACCGTGGGTCAGAAGCCGAGCAAGGCGAAGTATTACTTGGAAGACACAAGCGAGATTCTGAGAATGTTGCAGGGGCTTGCCAATGCTTCAGAGCAATCTGTTACAAGTTCTCCACAGGCTCCTCCTCAATTAGCATTGTGA	1566	0.4438	MLGVDDMDIFKGISLKLLAMEQLLLQHPDKRGRVVLVQIANPARGRGKDVQEVQSETYATVKRINNTFGRPGYTPVILIDTPLQFYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGSEKIDKILGTSTFTQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALIVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMMQPGSISTTPSNEAVAILNSLCKDTKNCVFIVSGKERKTLTDWFSSCQRLGVAAEHGYFVRTNHNADWEECVSVPDFDWKQIAEPVMQLYTETTDGSNIEAKETALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSSPHIVEVKPQGVSKGIVAERLLFTMQQMEVIPDFVLCIGDDRSDEDMFGVIMNARESLSPVAEVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQSVTSSPQAPPQLAL	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc182172g00004	521	Pfam	Glycosyltransferase family 20	1	209	IPR001830	GO:0003824\|GO:0005992
	Stsc182172g00004	521	Pfam	Trehalose-phosphatase	259	492	IPR003337	GO:0003824\|GO:0005992
	Stsc182172g00004	521	SUPERFAMILY	HAD-like	256	502	IPR036412	-
	Stsc182172g00004	521	NCBIfam	trehalose-phosphatase	254	502	IPR003337	GO:0003824\|GO:0005992
	Stsc182172g00004	521	FunFam	Alpha,alpha-trehalose-phosphate synthase	1	193	-	-
	Stsc182172g00004	521	CDD	HAD_TPP	257	493	-	-
	Stsc182172g00004	521	Gene3D	Glycogen Phosphorylase B;	1	193	-	-
	Stsc182172g00004	521	FunFam	Trehalose-6-phosphate synthase 2	339	418	-	-
	Stsc182172g00004	521	Gene3D	-	381	514	IPR023214	-
	Stsc182172g00004	521	Gene3D	-	255	372	IPR023214	-
	Stsc182172g00004	521	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	255	372	-	-
	Stsc182172g00004	521	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	1	213	-	-
	Stsc182172g00004	521	FunFam	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	385	514	-	-
	Stsc182172g00004	521	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	503	IPR001830	GO:0003824\|GO:0005992
	Stsc182172g00004	521	NCBIfam	HAD-IIB family hydrolase	258	459	IPR006379	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc182172g00004	Stsc-Chr182172	15599	18057	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc182172g00004	1	502	Trehalose Biosynthesis Gene Families	AT4G17770	78.571	0.0	846

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc182172g00004	K16055		-	gmx:100782799	946.421