Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182163g00006 ATGGATGGGAGAGGAGGCATGGGATTCAGTAGTGGGTCATCTCCATTCTACGTGCACAGAGAGAGTGGAGGGTTCCAAGGAGCCCCTGGGATCAGAGCATTATCAAACACTACCGTTCAATCTCAGTCAAATGCTAGCGGAGGTGTTGTTTCTAATTCCACATTTTCATTAGAGCTTCAACCTCAAGCACAGGCTCAGGCCCAGGCCGGTTTTAGTCATGGCATTAGCATTGGTGCCTCATCTTCTGGGGCTTTAGTGCCTATTTCTTCCACAGGTGAGCCTGTGAAGAGGAAGAGAGGGAGACCCCGCAAGTATGGCCCTGAAGGACGAGGACAGGGACAAGGACCAGTTTCTTTGAGACTTTCACCAATGTCTGCTCCTGCTAGTTGGAACGCTGGTTCAGCCTCTGATTCCCACAAAAGGGGTAGAGGACGCCCTCCTGGATCCGGAAGGAAACAACAGCTAGCTAATCTTGGTGAATGGATGAATAGTTCTGCAGGGCTGGCCTTTGCACCCCATGTAATCTCCATTGGAGAAGGGGAGGACATTGTAGCAAAGCTGTTGTCGATATCACAGCAGAGACCACGTGCTCTCTGCATCATGTCGGGTACTGGGATAGTTTCTCTAGTTACTCTGAGACAGCCTGCTTCTACCAATGCCAGTGTAACAATTGAGGGCCGATTCCAAATATTGTGTCTATCTGGTTCTTACTTGGTTGCTGAAGACGGTGGACCGTCCAATAGAACAGGTGGCATAAGTGTTTCCCTTTCTAGCTCTGATGGTCATGTTATTGGGGGTGGTGTTGAAGTGCTCATTGCTGCAAGCCCAGTGCAGGTGGTAGTGTGCAGTTTTGTATATGGTGGCAGTGCTAAGACCAAGCCCACACAAGTTACCCTGATGAAAGAGGAGAGTTCCGAGCCTCAGCGCAATGGTAAGTTAGCTTCTTTGGCCGGTGCTCCACATAGTCAAAACTACATCCCTTCTGCTACAGGCATTTGGCCTGGATCAAGACCGGCAGAACTCAAGAGCGTGCATGGACACACTGGCATTGACTTGACACGTGGATGA 1068 0.5009 MDGRGGMGFSSGSSPFYVHRESGGFQGAPGIRALSNTTVQSQSNASGGVVSNSTFSLELQPQAQAQAQAGFSHGISIGASSSGALVPISSTGEPVKRKRGRPRKYGPEGRGQGQGPVSLRLSPMSAPASWNAGSASDSHKRGRGRPPGSGRKQQLANLGEWMNSSAGLAFAPHVISIGEGEDIVAKLLSISQQRPRALCIMSGTGIVSLVTLRQPASTNASVTIEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSSDGHVIGGGVEVLIAASPVQVVVCSFVYGGSAKTKPTQVTLMKEESSEPQRNGKLASLAGAPHSQNYIPSATGIWPGSRPAELKSVHGHTGIDLTRG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182163g00006 355 MobiDBLite consensus disorder prediction 300 322 - -
Stsc182163g00006 355 MobiDBLite consensus disorder prediction 82 153 - -
Stsc182163g00006 355 MobiDBLite consensus disorder prediction 1 31 - -
Stsc182163g00006 355 CDD DUF296 172 284 IPR005175 -
Stsc182163g00006 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Stsc182163g00006 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 286 - -
Stsc182163g00006 355 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Stsc182163g00006 355 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Stsc182163g00006 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 311 IPR039605 GO:0003680
Stsc182163g00006 355 Gene3D - 172 304 - -
Stsc182163g00006 355 ProSiteProfiles PPC domain profile profile. 164 305 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182163g00006 Stsc-Chr182163 20339 23198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182163g00006 1 355 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.717 1.57e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182163g00006 - - gmx:100798706 420.239