Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182159g00004 ATGGGAATCGAGAGAGGGGGACTAAAGGGGTTGAGAAGCGGGTGGAGCGTGCCACCCAAGCCATGCGACTCCTGCAAGATGGCTTCAGCCGCACTCTTCTGCCGCCCCGATTCAGCCTTCTTATGCATAGCCTGTGATTCCAAGATTCACTCTGCCAACAAGCTTGCTTCCCGCCATGACCGCGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCCGTCACCTGCAAGGCTGACGCTGCTGCTCTCTGCGTCACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGACCGTGTTCCTGTGGAGCCCTTCTTTGACTCTGCTGACTCCATCGTCAAGGCCTCCGCCGCCTCCTTCACCTTCGTCGTCCCAACCGACGCCGCCGACAACGGCATCTCCTCCAATGGCTTCCCGAACGACGATGGCGCCTGGCTCATCCCTAACCCCAACTACGGGTCCAAGCTCATGGACGCCCCGGACATGAAATCGAGGGAGATGTTCTTCTCAGAAATGGATCCCTTCCTCGATTTCGATTACTCCAACTCGTTCCAGAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCCGTTCAGTCTAAACCCGCTCCCTTGATGAATCACCATGCCGAAGGTACCTGCTTCGACATCGATTTTTGTAGATCGAAGCTCTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTGTCAGATATATCGTACTCGTTTGGACGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGTAGCTACGCAGCTGTGTGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATCAGATACGCCTCAAGGAAGGCTTATGCCGAAACCCGGCCAAGAATCAAAGGCCGGTTCGCTAAACGTACCGAAATCGAGTCGGAGGTGGATCGCCTCTACAGCCCCGGCGGTGGTGTCATGCTGGACAGCCAGTACGGCGTGGTACCGTCGTTTTAG 1095 0.5708 MGIERGGLKGLRSGWSVPPKPCDSCKMASAALFCRPDSAFLCIACDSKIHSANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHDRVPVEPFFDSADSIVKASAASFTFVVPTDAADNGISSNGFPNDDGAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQSKPAPLMNHHAEGTCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGVATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVMLDSQYGVVPSF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182159g00004 364 CDD Bbox1_BBX-like 65 107 - -
Stsc182159g00004 364 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Stsc182159g00004 364 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Stsc182159g00004 364 CDD Bbox1_BBX-like 21 64 - -
Stsc182159g00004 364 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Stsc182159g00004 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 352 IPR045281 GO:0009909
Stsc182159g00004 364 Pfam CCT motif 293 335 IPR010402 GO:0005515
Stsc182159g00004 364 ProSiteProfiles CCT domain profile. 293 335 IPR010402 GO:0005515
Stsc182159g00004 364 SMART bboxneu5 65 107 IPR000315 GO:0008270
Stsc182159g00004 364 SMART bboxneu5 17 64 IPR000315 GO:0008270
Stsc182159g00004 364 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182159g00004 Stsc-Chr182159 16746 18863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182159g00004 1 364 C2C2-CO-like Transcription Factor Family AT5G57660 56.032 8.72e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc182159g00004 zf-B_box 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182159g00004 - - gmx:100805693 580.482