Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182159g00003 ATGGTGCTTCCTGCTTACCCTTCTAAGGTGCTAATTGGACTCTCTTTGGACTCAGATGACAGCAGGGAGCTTCTCTCATGGGCTATAAGAGTCCTTGCCAAACCAAATGACAGCATTGTGGCAGTGCATGTTCTTGTTACTGACGATAAGAAGAAGCGCGTCTCAGTCCGAAAGAGGCAATCACAGCTTAGGCAGGCAAAGACACATGTTATATCTATGCTTGGAGAATTTGCACAAACATGTTGGTCTAAGCAGGTTAACCTGGAGGCAAGAGTGGCATTCAGTTCCACAGTAGGTGGAGGTTTAGCTGAGGAAGCCAAGTCCAACAATGCTGATTTTCTTCTTCTCCGTGGCTCAAGAAACCCCAAAAACAAGAATGGAAGTTCCAAGGGAATTAGCAAGCATTGCTTTGAGCATGCACATGAAGGATGCACCGTGGTCTCGGTTGGGAAATTCGCCAAGGCAGAGCAAGGTTTCAATTCAAATTCAAAGCATTCTCAAGATGATAGTGAAGCAAGTTCTAAATGGTTACCAAAGGATGATGATAAACAAGGTGATAAGGCTGCTGCTACCTTCCCTGTTCTGAATGAATTCACGTCTGACTCTGAGTCTAAAGAGCAGAACGGTTCACCAAGAACCGTTCTGGATGCGCTGGAGGGGCAATCTAACAGCACAGAAGATGATACATTCAGCACTATGGTGTCAAGCACCTGCACCATAGATACACCTTCATTGGTTCCAAAGAGAAGATCAAAGCCACAATCTCCATTGAGGCGCATAGCCTCCTTCCTTGGCTCACCATTCCGAAGAAAACACAGCATATCCAAGAATGAAAAGGCTCAGCCCTTGTTGAAGTGCTTCAGCTATGAGCAGATAGCCAATGCTACTAATGAATTCCACCAAGATAATTTGGTTGGGCGAGGCGGATACTCAGAAGTATATAAAGGTGATCTTTGTGATGGAAGAAGCATTGCTGTGAAGAGATTGGCAAAGGACAACAATGATCCTAACAAGGAGAAAGAGTTCCTTATGGAATTGGGAGTTATTGGACATGTCTGTCATCCTAACACTGCATCCTTGGTTGGATGCTGCGTCGAAAATGGACTCTATCTCGTTTTCAATTACTCTCAGAATGGAAACCTGGCAACTGCATTGCACGGCAAAGCAGGAGATTCACTTGACTGGCCAATCAGATACAAGATTGCAATTGGAGTTGCAAGGGGACTCCATTACCTTCATAAATGTTGCAAACACAGGATAATTCATCGGGATATCAAAGCTTCCAATGTTCTTCTAGGCCCTGATTATGAGCCACAGATAACGGATTTTGGGCTTGCAAAGTGGCTTCCAAACAAGTGGAGTCATCATGCTGTGATCCCAGTGGAGGGGACATTCGGATACTTAGCACCTGAGTACTTCATGCATGGGATAGTGGATGAGAAAACAGATGTTTTTGCATTTGGTGTTCTTCTTCTTGAGATTGTAACTGGACGTAGACCTGTTGATTCATCAAGCCAAAACCTTCTCCTTTGGGCAAAGCCTCTCATGGAATCAGGGAATATTGGAGAGCTAGCTGATCCAAAACTGGAAGCTAAATATGATGAAGACCAACTCTATAGGTTGGTGCTTACAGCTTCATACTGTGTCAGACAAAATGCCACGTGGCGTCCTCCAATGAGCGAGGTGTTAGAGTTGCTCACAAGTGGGAATGAGAGTGAGGCAGGGAAAAGCTGGAGGATCCCAAAATTCACTTCAGATGAATTGGATGATTATTCCATGGTCTTTGGATATGATGTCCCCTCAGATATATCTCTCGAGGACTTTCTCTGA 1830 0.4464 MVLPAYPSKVLIGLSLDSDDSRELLSWAIRVLAKPNDSIVAVHVLVTDDKKKRVSVRKRQSQLRQAKTHVISMLGEFAQTCWSKQVNLEARVAFSSTVGGGLAEEAKSNNADFLLLRGSRNPKNKNGSSKGISKHCFEHAHEGCTVVSVGKFAKAEQGFNSNSKHSQDDSEASSKWLPKDDDKQGDKAAATFPVLNEFTSDSESKEQNGSPRTVLDALEGQSNSTEDDTFSTMVSSTCTIDTPSLVPKRRSKPQSPLRRIASFLGSPFRRKHSISKNEKAQPLLKCFSYEQIANATNEFHQDNLVGRGGYSEVYKGDLCDGRSIAVKRLAKDNNDPNKEKEFLMELGVIGHVCHPNTASLVGCCVENGLYLVFNYSQNGNLATALHGKAGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWSHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIVTGRRPVDSSSQNLLLWAKPLMESGNIGELADPKLEAKYDEDQLYRLVLTASYCVRQNATWRPPMSEVLELLTSGNESEAGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDFL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182159g00003 609 Gene3D HUPs 5 149 IPR014729 -
Stsc182159g00003 609 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 376 580 - -
Stsc182159g00003 609 FunFam Putative receptor-like serine/threonine-protein kinase 268 375 - -
Stsc182159g00003 609 SUPERFAMILY Protein kinase-like (PK-like) 275 566 IPR011009 -
Stsc182159g00003 609 Gene3D Transferase(Phosphotransferase) domain 1 377 582 - -
Stsc182159g00003 609 MobiDBLite consensus disorder prediction 158 186 - -
Stsc182159g00003 609 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 141 - -
Stsc182159g00003 609 ProSiteProfiles Protein kinase domain profile. 299 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182159g00003 609 SMART serkin_6 299 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182159g00003 609 PANTHER OS08G0249100 PROTEIN 59 579 IPR046958 -
Stsc182159g00003 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Stsc182159g00003 609 MobiDBLite consensus disorder prediction 168 186 - -
Stsc182159g00003 609 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Stsc182159g00003 609 CDD USP_Like 9 120 - -
Stsc182159g00003 609 Pfam Protein tyrosine and serine/threonine kinase 301 565 IPR001245 GO:0004672|GO:0006468
Stsc182159g00003 609 Gene3D Phosphorylase Kinase; domain 1 262 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182159g00003 Stsc-Chr182159 10618 13093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182159g00003 287 605 Trihelix Transcription Factor Family AT1G70460 40.059 3.19e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc182159g00003 PK_Tyr_Ser-Thr 3.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182159g00003 - - gmx:100782832 967.992