Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182159g00002 ATGGGATCTTCCTTTAGTTGCTGTGGCTCTGACAAGATTGAAGAAGCAGCGCCAACATCATTTGGTGCAGTTAACAACAATAATTCATGGAGAATATTCACATACAAGGAGCTCCATGCAGCTACCAATGGATTCAGTGAGGATAACAAGCTTGGTGAAGGTGGTTTTGGAAGCGTCTATTGGGGAAAAACAACTGATGGTCATGAGATAGCGGTGAAGAAACTGAAGGCAATGAACTCAAAAGCGGAGATGGAATTTGCAGTAGAAGTAGAAGTACTTGGAAGGGTTAGGCACAAGAATTTGTTGGGTCTCAGAGGGTACTGTGCTGGGAATGAAGAGAGGCTCATAGTGTACGATTACATGCCAAATCTCAGCCTTCTTTCTCATCTGCATGGACAGTTTTCTAATGAAGTCCAACTCGATTGGAAAAGGAGAATCAACATTGCAATTGGATCCGGTGAAGGCCTCTTGTATTTGCACCATGACGTCACACCACACATCATCCACAGAGACATCAAAGCAAGCAACGTTCTTCTCAACTCCAACTTCGAGCCTCTTGTTGCTGATTTCGGTTTCGCTAAGCTAATCCCTGAAGGGGTTAGCCACATGACTACCCGTGTTAAGGGCACTTTGGGATACTTAGCACCCGAATATGCTATGTGGGGAAAAGTGTCTGAGAGTTGTGATGTGTATAGCTTTGGGATTCTTCTTTTGGAGCTTGTAACTGGAAGAAAGCCAATTGAGAAGCTTCCTGGTGGGGTTAAGAGAACCATAACGGAATGGGCTGAGCCCTTCATAAGTAAATCAAGGTTCAGGGATCTTGTTGATCCTAAACTCAGAGGCAACTTTGATGAGAATGAGGTGAAGCAAGCTATTAATGTGGCTGCACTCTGTGTCCAGAGTGAGCCTGACAAGAGACCCAACATGAAGCAAGTGGTTAACCTTCTCAAAGGCTATGAACCCAACCATGACTCTCTTTTGAAGACTACTAGGCTTCACAGTGTCAAATATACTGATACTTTGATGGCACTTGAACAGCCTGACGACGACGACGATGCAACTAATAGCAGTGGCTATGGGGTTTTTAGTGCCATAGAGGTCCAGAAGATGAACCTACCACCAAAACATTATTCATGA 1137 0.4433 MGSSFSCCGSDKIEEAAPTSFGAVNNNNSWRIFTYKELHAATNGFSEDNKLGEGGFGSVYWGKTTDGHEIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGNEERLIVYDYMPNLSLLSHLHGQFSNEVQLDWKRRINIAIGSGEGLLYLHHDVTPHIIHRDIKASNVLLNSNFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPFISKSRFRDLVDPKLRGNFDENEVKQAINVAALCVQSEPDKRPNMKQVVNLLKGYEPNHDSLLKTTRLHSVKYTDTLMALEQPDDDDDATNSSGYGVFSAIEVQKMNLPPKHYS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182159g00002 378 PANTHER OS01G0253100 PROTEIN 26 320 - -
Stsc182159g00002 378 Gene3D Phosphorylase Kinase; domain 1 19 120 - -
Stsc182159g00002 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Stsc182159g00002 378 Gene3D Transferase(Phosphotransferase) domain 1 121 339 - -
Stsc182159g00002 378 FunFam PTI1-like tyrosine-protein kinase At3g15890 121 332 - -
Stsc182159g00002 378 CDD STKc_IRAK 51 318 - -
Stsc182159g00002 378 SUPERFAMILY Protein kinase-like (PK-like) 28 331 IPR011009 -
Stsc182159g00002 378 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Stsc182159g00002 378 Pfam Protein kinase domain 46 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182159g00002 378 SMART serkin_6 45 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182159g00002 378 FunFam PTI1-like tyrosine-protein kinase At3g15890 19 120 - -
Stsc182159g00002 378 ProSiteProfiles Protein kinase domain profile. 45 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182159g00002 Stsc-Chr182159 2113 3703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182159g00002 6 324 Trihelix Transcription Factor Family AT5G38560 47.692 1.91e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc182159g00002 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182159g00002 - - ahf:112698754 689.878