Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182158g00001 ATGTTTCCAATGAATTCTAGGTGCTTCCTTCCACAAGAGTCCTTATTCGTCAACTCAAGCAGCATGGCTTCTTCATTTTCTTCAAATTCTGCAGCTGCAGCAGCAGCAGCAGGAGAAGATAGCAGGGTGAATAGTACCAGAAACCGGCCTCTTCCACGTGCCTCCCCGCCTTCGTTTTTGGTTCAGATGGCGATGAGGGTATCGAGAGCAAGATGGTTTACCTTCTTGAGAAGAGTGTTCCATTACCAAAATGGATCAAGGTCAAACCTTGGCTCTAATCCTTTCAATACTAGAACATGGATGATGATGGAGTTTATAGCTTTAATGGTTCAAATAATCACTATAACATTCACTTTGGCTATTTCGAAACGTGAGAGGCCTGTTTGGCCTATGAGGATTTGGTCAGCTGGTTATGATATTGGTTGTGTTCTTAATCTGCTGCTGCTTTATGGCCGATACCGGCAAATCTGTGCAAGTCAAGGAGACGTTCTCAACTTTTCTGATATTGAACAACAGAGAAGCAATGAAGAAACCAGTGTATACAGGATTTCCCATTTGATGAACAAGTGCAGGACTTCACTTGATCTTTTCTTTGCAATTTGGTTTGTGATGGGAAATGTTTGGGTCTTCGACTCGCGTTTCGGATCCTTTAACCAAGCTCCAAAGCTCCATGTTCTTTGCANNNNNNNNNNCTACTCTTTCCCTTTCCTTCTGTTTCTGCTCTTGTGTTGCTGTGTGCCTCTAACTAGCCGGCTCCTCGGCTACAACATGAATATGGGATCTTCTGACAAAGGAGCATCTGATGATCAAATCTCACAACTTCCAAGTTGGAGATATAAAGAATCACATACCAAGTTAGAGTTCGGCAACAAGGATTCCGAAAGCAGTGAGAAATTGATCAATGAGGACTCAGAATGCTGTATTTGCTTGGCAAAGTACAAAGACAAAGAAGAAGTTAGACAATTGCCATGTTCCCATGTATTCCACCTTAAATGTGTGGATCAATGGCTGAAAATCATATCTTGTTGTCCCCTTTGCAAACAAGGACTAGAGAAGTAG 1059 0.4202 MFPMNSRCFLPQESLFVNSSSMASSFSSNSAAAAAAAGEDSRVNSTRNRPLPRASPPSFLVQMAMRVSRARWFTFLRRVFHYQNGSRSNLGSNPFNTRTWMMMEFIALMVQIITITFTLAISKRERPVWPMRIWSAGYDIGCVLNLLLLYGRYRQICASQGDVLNFSDIEQQRSNEETSVYRISHLMNKCRTSLDLFFAIWFVMGNVWVFDSRFGSFNQAPKLHVLCXXXXYSFPFLLFLLLCCCVPLTSRLLGYNMNMGSSDKGASDDQISQLPSWRYKESHTKLEFGNKDSESSEKLINEDSECCICLAKYKDKEEVRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLEK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182158g00001 352 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 35 349 - -
Stsc182158g00001 352 Pfam RING-like zinc finger 305 333 IPR001841 -
Stsc182158g00001 352 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Stsc182158g00001 352 SMART ring_2 306 346 IPR001841 -
Stsc182158g00001 352 SUPERFAMILY RING/U-box 297 350 - -
Stsc182158g00001 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 351 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182158g00001 Stsc-Chr182158 3012 5626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182158g00001 59 350 C3H Transcription Factor Family AT4G26580 69.565 2.19e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182158g00001 - - adu:107496222 609.372