Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182156g00003 ATGAGCAGTAGGGAAGGTTTGTCCTTCTCCCTTTTAAAGTTTCTTCTCCTAATTATCACGTTTGTGCTACCACAACAAACTTGCATAGCAGATGATCATAACAGAACATGTGTCCCTTCATCCTGCGGCAAGCTTACCAACATAACGCATCCTTTCCGGCTGAAGGACGACCCCGCAAACTGCGGCCATCCAGGGTACGAGTTGACCTGTGAAAATAACATCACCCTCTTACAACTTTTCCACGGTAGAAGCTACCGTGTTGAGGCAATCAACTACAACAACTTCACCATCCGCCTTGTAGATCCAGCCATCTCAGAGAATGACTGTTCTACCCTTCCTCGCTATTCTCTATCCAGTTACAATTTCACTGGCTATACTAATTATTTAGTCGGGGGGAATTTGGAAACAATAACTCAGGATCGCGTTTTCTTAAGTGGCTCCACGAAGGAGTTCAGGGAAGTAAGAATGTTCGAGCATGTGGTTTTCTTGAAGTGCAGCAATCCGGTGAGGGACGATCCACGATACGTGGACACTGCACCTTGCATTAGCAAGGATAATGTTTATGCTGTTCTTGGAGACTTGGCGGTAGGTGAATTAAGAGATGATTGCCGTGTGAAGCTGATTTCACCCTCATCATTTCTTGTTCCACCTAGATTATTATGGTATGATTCAGAATTTATCCAACAGAACATGTCCTACTATGAAATCCATAGGGAACTCAGCTACGGATTTTATCTTTCTTGGATGCTGCACTTAACTTGTGAAGAGAAATGCGGGATGCAGAAGCTTTGCTCGTTCAACAAAATCTACCAAAATATTACCTGTTGGGATCCGGAACCCGCCGTCTGTGAGCATGGCGGGTACTATATTCTGCTCAGCCCCAAGTGTGGACTTCGCAAACTGATACACATGGATAAAGCTAACGAGTTCAATGAAAGAGATGTAATACCTGTTGTTAAGGTTGGATTATTCACGGGATTGTTTTTGGCGCCATACATAATCCTCATACACACATTAGGTGTCATGTTTTTCTTTGGATTGTTGATCTACACGTTTCGACGAAGGCATTTATCAATCTATGAAAATATTGAGGATTTTCTTCAAGGAAACACTCTCATGCCAATAAGATATTCATATAAAGAGATAAAGAAGATGACCAGAGGTTTCAAGGAAAAGCTTGGAGAAGGAGGATTTGGTGCAGTCTACAAAGGAAAACTACAGAGTGGACCTTTTGTGGCCATAAAAATATTAGGTAAAGCTAAAGCTAATGGCCAAGAATTCATCAGTGAAGTTGCTACCATTGGTAGAATACACCATGCCAATGTGATTTTGCATTTTGACATCAAGCCTCACAACATCCTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATTGTATCTTTGACTGCGGCAAGAGGAACCATTGGTTACATGGCTCCAGAACTGTTCTATCAGAATATTGGAGCAGTATCTTATAAGGCTGATGTCTATAGCTTTGGAATGCTTCTGATGGAAATGGCGAGTCAGAGAAGAAATTTGAATCCACATGCAGAGAATTCAAGCCAACTTTACTTTCCATATTGGATTTATGATCAATTGGCTGCAGAGGAAAATGATGAGATAGAAATGGAAAGTTTTGATCATGAAGAAAGGAGTGAAGTAGCTAAAAAAATGTTTATAACTGCATTATGGTGTATACAACTGAAGCCAAGTGATCGTCCGTCAATGAACAAAGTAGTGGAAATGTTAGAAGGAGATGTTGCAAGCATTGAAATGCCTCCAAAGCCTTCGTTTTATCCAAATGATGTGATTCAAAGGGACTCCAATGTTGAATCATCAGGAGCAAATGCTTCAAATGATTCTGATGTCACTGCAAGTTTTGAGGAGGAAAGTACAACCAACCCCTTGTTAAAGTTTTCTAGTTGA 1965 0.4087 MSSREGLSFSLLKFLLLIITFVLPQQTCIADDHNRTCVPSSCGKLTNITHPFRLKDDPANCGHPGYELTCENNITLLQLFHGRSYRVEAINYNNFTIRLVDPAISENDCSTLPRYSLSSYNFTGYTNYLVGGNLETITQDRVFLSGSTKEFREVRMFEHVVFLKCSNPVRDDPRYVDTAPCISKDNVYAVLGDLAVGELRDDCRVKLISPSSFLVPPRLLWYDSEFIQQNMSYYEIHRELSYGFYLSWMLHLTCEEKCGMQKLCSFNKIYQNITCWDPEPAVCEHGGYYILLSPKCGLRKLIHMDKANEFNERDVIPVVKVGLFTGLFLAPYIILIHTLGVMFFFGLLIYTFRRRHLSIYENIEDFLQGNTLMPIRYSYKEIKKMTRGFKEKLGEGGFGAVYKGKLQSGPFVAIKILGKAKANGQEFISEVATIGRIHHANVILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASQRRNLNPHAENSSQLYFPYWIYDQLAAEENDEIEMESFDHEERSEVAKKMFITALWCIQLKPSDRPSMNKVVEMLEGDVASIEMPPKPSFYPNDVIQRDSNVESSGANASNDSDVTASFEEESTTNPLLKFSS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182156g00003 654 MobiDBLite consensus disorder prediction 611 654 - -
Stsc182156g00003 654 SUPERFAMILY Protein kinase-like (PK-like) 377 620 IPR011009 -
Stsc182156g00003 654 SMART serkin_6 387 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182156g00003 654 Pfam Wall-associated receptor kinase galacturonan-binding 37 101 IPR025287 GO:0030247
Stsc182156g00003 654 ProSiteProfiles Protein kinase domain profile. 313 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182156g00003 654 Gene3D Phosphorylase Kinase; domain 1 364 445 - -
Stsc182156g00003 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Stsc182156g00003 654 Pfam Protein kinase domain 439 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182156g00003 654 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Stsc182156g00003 654 MobiDBLite consensus disorder prediction 615 654 - -
Stsc182156g00003 654 PANTHER RUST RESISTANCE KINASE LR10-RELATED 360 443 IPR045874 GO:0004672
Stsc182156g00003 654 Gene3D Transferase(Phosphotransferase) domain 1 446 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182156g00003 Stsc-Chr182156 3578 7315 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182156g00003 12 612 Receptor kinase-like Gene Family AT5G38260 29.421 2.03e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc182156g00003 Pkinase 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182156g00003 - - adu:110273082 620.928