Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182156g00002 ATGCCGGCATTGTTGGTTTTGCTGCTGCTGCTGAATTTGAATCTAATGAGCATAAGAATTTGCCACGGTCATGCTGATCCTGATCCAGTTCCTTGTCCCGTGCGTCTCTCCTGTTCAGAAAACAAAATCAATATTCTTGAGCTGAATGGCTCTTCATCCTCAGTAAAACTCCCTGTCACTAACATTAATTACAAATCAAAAACTTTACAAGTGTATGATCCCAAACACTGTTTCCCAAAACTCTTTCTCACACTCAATTACTCATCATTTCATCCTTTCCGATCCATTATAATTGATCACTATGGTTTTGGAGATCCGATGGAGCCAACAAACTTTACTTTCTTTGATTGCTCTTCAAGTGTGTCACCAGATCAGTTATCTTGCCCGATTAGCATTGCTGCTGATTACTATGATGTCGTGGAGTTAAACCTTGTATTCTGCAAAGCGTTGACTCGTCATGTCTTGCCAATTCCCGTACAAAATATACGCTCGGCTCCATTTTACTTGGCATGGTCTGAGAAAACTTTCAATAATGGATGCTTTCTTGCTTGCAAAGTATCCAACAAGGGCATCCAACACTATATATCCATTTTCTTACCCCTTGCAGGTGCAGCTTTCCTTGCGGTAATACTAGGTGCCTTGTATGTTATATATAGCTATTACATAAACAAAGGAGAAGATCAACGAAGAGTTGAAACTTTTTTGAAAGACTACAGAACATCAAACCCTACAAGATTCTCTTATGCTGATATCAGGAGAATCACAAAGCAATTTAAGGACAAGCTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAACTGTCCAATCAAATTATTGTTGCTGTCAAGATTCTCAATACCACTGAAGGAGATGGGAAAGAGTTCATAAATGAAGTTGAAACTATGGCCAAAATCCACCATGTCAATGTGGTTCGCTTGCTTGGCTATTGTGCAGACGGATTTCACCGCGCTTTAGTTTATCACTTCTTTCCCAAAGGTAATCTCCAGAGCTTCATTGCTCCGAGTGACAATGAAAGCTTCCTCGGATGGAATAAGTTGCATCAGATTGCTCTGGGCATAGCCAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTCGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTTTCACTCCAAAAATCTCTGACTTCGGTTTGGCAAAGTTATGCTCCAAGAATAGAAGTACAGTGTCCATGACTGCAGCCAGGGGAACTTTAGGGTACATGGCGCCAGAAGTTCTTTCAAGAAACTTCGGCAATGTATCTTATAAATCTGATATCTACAGCTATGGGATGTTACTGCTTGAGATGGTTGGAGGAAGAAAAAACACAAATGAGAATCAAGAAACTTTTCAAGTTCTATATCCAGATTGGATACACAGTTTGCTTGAAGGAAATGACACATATATTCCAATTGATGATGATGGAGATTTTAAAATTGCAAAGAAACTTGCAATAGTGGGACTATGGTGTATTCAGTGGCACCCGGTGCACCGTCCCTCCATGAAGAGTGTAGTTCAAATGCTTGAAGGAGAGGAAGACAAGTTGAAAGTGCCGCCAAATCCTTTTGAATCTGCTGCTACCACTGGTTCAAGCGCAGTTATTCCAGCAAGAGGCTTGAATTTGGAATTGGAAGTGATTCCAGAAACAGATTAG 1701 0.4039 MPALLVLLLLLNLNLMSIRICHGHADPDPVPCPVRLSCSENKINILELNGSSSSVKLPVTNINYKSKTLQVYDPKHCFPKLFLTLNYSSFHPFRSIIIDHYGFGDPMEPTNFTFFDCSSSVSPDQLSCPISIAADYYDVVELNLVFCKALTRHVLPIPVQNIRSAPFYLAWSEKTFNNGCFLACKVSNKGIQHYISIFLPLAGAAFLAVILGALYVIYSYYINKGEDQRRVETFLKDYRTSNPTRFSYADIRRITKQFKDKLGEGAHGAVYKGKLSNQIIVAVKILNTTEGDGKEFINEVETMAKIHHVNVVRLLGYCADGFHRALVYHFFPKGNLQSFIAPSDNESFLGWNKLHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVLSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNENQETFQVLYPDWIHSLLEGNDTYIPIDDDGDFKIAKKLAIVGLWCIQWHPVHRPSMKSVVQMLEGEEDKLKVPPNPFESAATTGSSAVIPARGLNLELEVIPETD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182156g00002 566 ProSiteProfiles Protein kinase domain profile. 256 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182156g00002 566 Pfam Protein tyrosine and serine/threonine kinase 258 524 IPR001245 GO:0004672|GO:0006468
Stsc182156g00002 566 Gene3D Transferase(Phosphotransferase) domain 1 331 536 - -
Stsc182156g00002 566 SUPERFAMILY Protein kinase-like (PK-like) 233 525 IPR011009 -
Stsc182156g00002 566 Gene3D Phosphorylase Kinase; domain 1 230 330 - -
Stsc182156g00002 566 PANTHER RUST RESISTANCE KINASE LR10-RELATED 227 540 IPR045874 GO:0004672
Stsc182156g00002 566 FunFam PR5-like receptor kinase 331 536 - -
Stsc182156g00002 566 FunFam serine/threonine-protein kinase PBS1-like 224 330 - -
Stsc182156g00002 566 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182156g00002 Stsc-Chr182156 999 3206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182156g00002 246 537 Receptor kinase-like Gene Family AT1G66980 50.167 6.08e-99 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc182156g00002 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182156g00002 - - adu:107495716 878.241