Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182150g00002 ATGGAGGGAAAAGATGAAGATGTGAGAGTTGGAGCAAATAGGTACAGAGAGAGAGAACCAATAGGAACAGCGGCACAAGCAGAAGAAGATGGAAAATACTATAAGGAACCACCATCAGCACCATTTTTGTTTGAGCCTGGTGAATTGTCATCTTGGTCCTTCTACAGGGCATGCATAGCTGAGTTTGTGGCCATGTTTTTGTTCCTTTACATCACAGTGTTGACGGTTATGGGTGTGGCTAAATCCAGTAGCAAGTGTAACACTGTTGGTGTGCAAGGGATTGCTTGGTCTTTTGGTGGCACGATCTTTGCTCTTGTCTATCGTGCTGCTGGCATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGTATGTTCTTGGCAAGAAATCTGTCACTAACAAGAGCAGTGTTCTACATAATCTTTCAGTGCTTGGGAGCCATTTGTGGTGCTCTGGTTGTGAAGGGGTTCCAATCACACCAATATGAAAGGCTTGGTGGCGCTGTCAACTCTGTTAGCAGAAGCTACTCCAAAGGCGGTGGCCTTGGTGCTGAGATTGTTGGCACTTTTCTTGTTGTTTACACTGTTTTCTCTGCTACCGATGCCAAAAGAAATGCCAGAGATTCCCATGTTCCTATTTTGGCACCATTGCCTATTGGTTTTGCTGTATTTTTGGTGCATTTGGCTACAATTCCAGTGACTGGGAATGGTACCAATCCTGCTAGAAGTCTTGGTGCATTCCTTGTATACAACAAGGACCAAGCTTGGGATGGCCATTGGATCTTTTGGGTAGGTCCTTTCATTGGGGCAGCACTTGCAGCTTTGTACCATCAAATTGTGACAATAATAACTGGTTTAATTGGTCTTAATTAA 873 0.4456 MEGKDEDVRVGANRYREREPIGTAAQAEEDGKYYKEPPSAPFLFEPGELSSWSFYRACIAEFVAMFLFLYITVLTVMGVAKSSSKCNTVGVQGIAWSFGGTIFALVYRAAGISGGHINPAVTFGMFLARNLSLTRAVFYIIFQCLGAICGALVVKGFQSHQYERLGGAVNSVSRSYSKGGGLGAEIVGTFLVVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGNGTNPARSLGAFLVYNKDQAWDGHWIFWVGPFIGAALAALYHQIVTIITGLIGLN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182150g00002 290 ProSitePatterns MIP family signature. 116 124 IPR022357 -
Stsc182150g00002 290 Gene3D Glycerol uptake facilitator protein. 42 283 IPR023271 -
Stsc182150g00002 290 SUPERFAMILY Aquaporin-like 49 281 IPR023271 -
Stsc182150g00002 290 NCBIfam MIP family channel protein 60 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PRINTS Major intrinsic protein family signature 135 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PRINTS Major intrinsic protein family signature 98 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 FunFam Probable aquaporin PIP1-2 40 288 - -
Stsc182150g00002 290 CDD MIP 56 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 Pfam Major intrinsic protein 48 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc182150g00002 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 281 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182150g00002 Stsc-Chr182150 11922 16600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182150g00002 1 280 Major Intrinsic Protein MIP AT3G61430 74.643 1.14e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182150g00002 K09872 - cave:132192212 482.641