Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182149g00001 ATGGATGCGCAAATTTCAAGTTCAAGTTTCTTTCCTGCAATGATTATAACAGGTCTAGTGATCACAACTTTCTTCCTTCTCGGCTACTACATCTTTGTGATCAAGTTCTGCCTTAATTTGCAAAGCGGCAGCCTCGTGCGTCGTCGGGGGTTTACCCTCCGACGCAATGAGGCTCTCGCCACATTATCCCCTGAGCCAGAGCATCGGGGACTAGAGGAAGCGATTATCTGGTCGATCCCGGTTATTCATTACAAGAATTGTGACGAAAGCTCGAGCAAGTGCTCGGTTTGCTTGAACGAGTTTCAACAAAATGAGAAGCTGAGGGCTATACCAAACTGCAACCATACCTTTCACATTGATTGCATAGATATTTGGCTGCAAAACAATGATAATTGTCCACTTTGTAGAACCAAGATTTCCCTACTATCCGGTCGAATCGACGTGGCGGCCGGAGAGATCAAAGCAGCAGGAGGGCCTACTACTTCTCCTCAGGATCAAATCTCGCAAGTTGAAAATGAAAACCGAGTTGTTAGTGGCTACGATCTAGATTCTGTTGTCATCAATTTGGAAAATGAGGATGACACTAGAGATCGAAATTCGGAAGCAGAAGATGTGAGAATTATTAGGAAGAAGGTCAGTAAGGTGAGTAGCATGGGGGATGAGGGTGTTGTTCTTGGTGTGAGAGCCAAAGGAGATGAACAATTCTTGGTGCACCCGATAAGAAGGGCTTTCTCAATGGACTCTTTAAGGAATAGTAAGTTCTTTCTTGAAGCTGAGCAAGATTTGATGCATCAAAATAATATCCATAGAAGTTGTTTGTG 821 0.4397 MDAQISSSSFFPAMIITGLVITTFFLLGYYIFVIKFCLNLQSGSLVRRRGFTLRRNEALATLSPEPEHRGLEEAIIWSIPVIHYKNCDESSSKCSVCLNEFQQNEKLRAIPNCNHTFHIDCIDIWLQNNDNCPLCRTKISLLSGRIDVAAGEIKAAGGPTTSPQDQISQVENENRVVSGYDLDSVVINLENEDDTRDRNSEAEDVRIIRKKVSKVSSMGDEGVVLGVRAKGDEQFLVHPIRRAFSMDSLRNSKFFLEAEQDLMHQNNIHRSCL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182149g00001 273 PANTHER RING-H2 FINGER PROTEIN ATL16 7 267 IPR044600 GO:0016567|GO:0016740
Stsc182149g00001 273 CDD RING-H2_EL5-like 94 136 - -
Stsc182149g00001 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 141 IPR013083 -
Stsc182149g00001 273 SMART ring_2 94 135 IPR001841 -
Stsc182149g00001 273 SUPERFAMILY RING/U-box 76 142 - -
Stsc182149g00001 273 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Stsc182149g00001 273 Pfam Ring finger domain 93 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182149g00001 Stsc-Chr182149 1857 2677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182149g00001 6 266 C3H Transcription Factor Family AT1G04360 37.013 8.92e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182149g00001 - - gmx:100775286 195.667