Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182147g00003 ATGGAGAACAACGTGAGTCATCATGAAATATTGAAGGTGATAGAGCAATGCCAAGTAGGTCCTCCGCCAGGTTCTGTTCCTTCTCCAACCTCTGTTCCCCTTTCTTTCTTTGATCTTCCTTTTTTTTGCACGCCTATAACATGCAAACGCATTTTCTTCTATGACTTCCCTTATCCCACAACACACTTGTTACAAAAAGTGCTTCCAAATCTGAAACAATCACTTTCACTCACTCTCAAACACTTCTTCCCTTTCTCTTCAAAAATAGTATTCCCTCCAAAGCCACAAACCCCTCACATTCTCTACTCAGAAGGTGACACTCTCACTTTCATAGTTGCTGAGTCCACAACAGTGAATCTCCACAACCTCGTATCTGACACACCAAGAGATGTCACGTGCTTCCACCCTTTTGTTCCAATGTTGCCTTCTTCACGTGTCTTAGAGGATGGCACCTTGTTGATACCTCCCATGGCTATTCAACTCACTATCTTTCCCAACTCTGGCTTTGCCATATGCAGCCACTTCAGTCACGTGGTTGTAGATGGGAAAGGATTCCATCACTTCATGAAGTTTTGGGCATCTGTTTGTAGTTGTGGCTATAAAGAGAACACTGTTGCCCTGCCATTCCATGATAGAGACATGATTAAAGACCCAGATGGGCTTAAGCATATTTTCTTAGAACCAGTGTGGAATTTGCCAAGAGAAAGCTTCATGAGCCTTGGCCACAATGTTCCTAGCGACAATGTTCGCCGCACGTTTGTGTTGAGACGCGACCAAGTTGATAATTTGAAGAAATATGTGTCTACTGAGTCTCAAAGACATGGCATAGAGATATTACATTTGTCAACCTTTGTTGTCACGTGCTCTTTGTTTTGGGTTTGTAAGGTAAAATCTGAAGAAATTAACGATGATGAAGAATTATATCTATGGTTTTCATTAGATTGTCGTACTCGTAACATTGCTGAATGGGAAATTCCCTCAACGTACTTTGGAAATTGTGTGGTTAATGACATTGCCGCAATGAAGAGGAGCAAGCTAGAGGGGCAAAATGGTATTTTTGAAGCAGCTGTTGCTATTGAGAACCAAGTTAGAAAAATGCAATCTGAACCTTATAATTGCGCTGAAATAATAATGTCAATTTATAGTAATTTTGATAGAGTGAAGCATCGTTTTCTGGGAATTGCAGGTTCACCAAAGTTTGGTTTGTATGAGACTGATTTTGGGTGGGGAAAACCCAAACTGAGTGAAGGGGTTCACCAACACTCTCAGGCGCTGTCCCTTTCTGATTGTAGGGACAAAGAACGTGGAATAGTTAAAGTTGGTGTCGTTATGGAAAGGGCTCAAATGCATAAATTCAACACCATTTTGGAAGAGCTTCTTGCTAAAATTGTAGCTTATGACTAA 1404 0.411 MENNVSHHEILKVIEQCQVGPPPGSVPSPTSVPLSFFDLPFFCTPITCKRIFFYDFPYPTTHLLQKVLPNLKQSLSLTLKHFFPFSSKIVFPPKPQTPHILYSEGDTLTFIVAESTTVNLHNLVSDTPRDVTCFHPFVPMLPSSRVLEDGTLLIPPMAIQLTIFPNSGFAICSHFSHVVVDGKGFHHFMKFWASVCSCGYKENTVALPFHDRDMIKDPDGLKHIFLEPVWNLPRESFMSLGHNVPSDNVRRTFVLRRDQVDNLKKYVSTESQRHGIEILHLSTFVVTCSLFWVCKVKSEEINDDEELYLWFSLDCRTRNIAEWEIPSTYFGNCVVNDIAAMKRSKLEGQNGIFEAAVAIENQVRKMQSEPYNCAEIIMSIYSNFDRVKHRFLGIAGSPKFGLYETDFGWGKPKLSEGVHQHSQALSLSDCRDKERGIVKVGVVMERAQMHKFNTILEELLAKIVAYD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182147g00003 467 Pfam Transferase family 31 457 - -
Stsc182147g00003 467 Gene3D - 10 240 IPR023213 -
Stsc182147g00003 467 Gene3D - 244 462 IPR023213 -
Stsc182147g00003 467 PANTHER - 11 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182147g00003 Stsc-Chr182147 13848 16558 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182147g00003 71 459 Monolignol Biosynthesis Gene Families AT5G48930 20.988 1.18e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182147g00003 - - ahf:112729058 498.434