Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182138g00002 ATGGCTTCTTCAAGTGGAAATGGAACACCTACAGGGTCTACTGGGTCTGGTTCACCATGTGGGGCATGCAAGTTTCTGAGAAGGAAGTGTGCTGCAGATTGCATATTCGCACCATACTTCTGCTCAGAACAAGGGCCTGCAAGATTTGCAGCCATACATAAGATCTTTGGTGCTAGCAACGTTTCCAAGCTGTTGCTTCATATTCCCGCTCATGATCGCTGTGAGGCCGTTGTCACCATTGCTTATGAGGCTCAAGCTCGTATCAGAGACCCCGTTTATGGTTGCGTCTCCCACATTTTCGCCTTACAACAACAGGTAGCATGCTTGCAAGCACAATTGATGCAAGTCAAGGCTCAGCTGGCACAGAATCAAATAGAATCTTCTAGGAACATAGAGAATCAATGGACCGGAGGGAATGTTGGTGGAGCCATGAACAATAATAATCCATTTGGTCATCACACCAATTACATGAACTACCCTGTATCTCCTCAGAGTTCACTTGAATCAATTGATCATCACAGCAACAACATCAATGATGGAACGGGAAATAATATGCATGACACAAGACCAGAGGATTTCATCAACTCATTCCAACAACCTTGTTCTAAGAGAAGATCATATAACAACACCACTAATGATGAGTTAGGTGAGCTGCAAGAATTGGCACTTAGGATGATGAGGAACTAA 687 0.441 MASSSGNGTPTGSTGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKIFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNQIESSRNIENQWTGGNVGGAMNNNNPFGHHTNYMNYPVSPQSSLESIDHHSNNINDGTGNNMHDTRPEDFINSFQQPCSKRRSYNNTTNDELGELQELALRMMRN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182138g00002 228 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 213 - -
Stsc182138g00002 228 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Stsc182138g00002 228 Coils Coil 99 126 - -
Stsc182138g00002 228 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182138g00002 Stsc-Chr182138 11473 12870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182138g00002 3 228 AS2 family AT2G42430 55.556 2.99e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc182138g00002 LOB 1.5e-36 No_clan