Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182135g00001 ATGGAAGGTCGCCGGAGGATAACACTTTATGATCAAATGACAGCTAGCAAAACCACCTCTCTAGCAGATTTGATCCTTCACGACAGTTTCACCGCCGTCTCCTCCGCTGCAGACTCCACCTCCGCCACCGCCGCCGTCGATGCCGAAAGCTACGAATTGAACCAAAGCCGAACCCTCGTAGATATCCTTCGCGAAGATGAACACAACAACAACACAACGGACCGCAAATCTCGGAAATCCTTCAGTTTCATTGACAAGCTTAGATTCAAGCTTGCACTCAATTCAAGATCAAATTACAGTAGTGAAAACAATTCCGCTAACAACAACAACAACAATCATATTCAAACAAACCTGTCCGAGTTGCAAGCGCGCATCGATCCGGACGAGTTGACTCAGCAAGACGCGACGACTCAGCGATCGCAAAACGACGCCGTTGCTTCCACCGCGGCCGCAGACCGTGAAATCCCGGCGGAAGTTGCGGTGGCTGGACCAGTCGGCGTGTCGCTGATGGATTTGTTGGAAGAAACGGAGATAGAAACGGGATTCGAAGTTTCGAGTAACAGAATGAGCGACGCTGATTTTGAAGATGCGATTGAATGCGAAGTAGAAGAAGAAAAGTGCGAGGAAGAAGGGGCGAGTATCGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGCGCGGCTTTTATACCCTGCGGGCACACGTTCTGCAGGCTGTGCTCCAGGGAGGTTTGGGTCAACAGAGGCAACTGCCCTCTCTGCAATAATTTCATTTTGGAAATTCTTGATATTTTCTGA 804 0.5 MEGRRRITLYDQMTASKTTSLADLILHDSFTAVSSAADSTSATAAVDAESYELNQSRTLVDILREDEHNNNTTDRKSRKSFSFIDKLRFKLALNSRSNYSSENNSANNNNNNHIQTNLSELQARIDPDELTQQDATTQRSQNDAVASTAAADREIPAEVAVAGPVGVSLMDLLEETEIETGFEVSSNRMSDADFEDAIECEVEEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSREVWVNRGNCPLCNNFILEILDIF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182135g00001 267 PANTHER OS01G0917900 PROTEIN 4 267 - -
Stsc182135g00001 267 SMART ring_2 219 256 IPR001841 -
Stsc182135g00001 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 267 IPR013083 -
Stsc182135g00001 267 MobiDBLite consensus disorder prediction 131 150 - -
Stsc182135g00001 267 SUPERFAMILY RING/U-box 218 263 - -
Stsc182135g00001 267 Pfam Zinc finger, C3HC4 type (RING finger) 216 260 - -
Stsc182135g00001 267 CDD RING-HC 219 256 - -
Stsc182135g00001 267 ProSiteProfiles Zinc finger RING-type profile. 219 257 IPR001841 -
Stsc182135g00001 267 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182135g00001 Stsc-Chr182135 2519 3773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182135g00001 1 267 C3H Transcription Factor Family AT3G25030 36.396 1.36e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182135g00001 - - gmx:100802736 201.445