Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182125g00002 ATGGGAAGGGGTAAGATTGAGATCAAGAGGATCGAAAACTCAAGCAACAGGCAAGTCACCTACTCAAAGAGAAAGAATGGGATCTTGAAGAAGGCAAAGGAAATCACCGTTCTATGCGATGCTCAAGTTTCCCTCATCATCTTTGCTGCTTCCGGCAAGATGCATGACTATATCAGCCCTTCCACCTCGCTAATTGACATCCTGGAGAGATACCACAAGACATCTGGTAAGAGGCTCTGGGATGCCAAGCATGAGAACCTAAACAGTGAAATTGAAAGAGTCAAGAAGGAGAACGACGGCATGCAAATCGAACTCAGGCACTTGAAAGGGGAGGATATCAACTCACTTAACTACAAGGAGCTGATGGGCTTGGAGGAGGCCTTAGAAAATGGTCTCCAAAGTGTCCGAGAGAAACAGGCATATACCTTCAAATCCCAAATTCCCAA 446 0.4574 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTSLIDILERYHKTSGKRLWDAKHENLNSEIERVKKENDGMQIELRHLKGEDINSLNYKELMGLEEALENGLQSVREKQAYTFKSQIP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182125g00002 148 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Stsc182125g00002 148 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Stsc182125g00002 148 ProSiteProfiles K-box domain profile. 84 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc182125g00002 148 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc182125g00002 148 Pfam K-box region 82 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc182125g00002 148 Coils Coil 77 111 - -
Stsc182125g00002 148 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Stsc182125g00002 148 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182125g00002 Stsc-Chr182125 23053 24516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182125g00002 1 140 MADS-box Gene Family AT5G20240 68.571 4.43e-69 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc182125g00002 K-box 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182125g00002 K09264 - gmx:100817554 259.61