Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182121g00001 ATGGAAAAGTTGAATTTTGTGAAGAAGAATGGGGTAAGTAGAATGCCTCCAGGATTCAGATTCCAGCCAACAGATGAAGAGCTTGTGTTTCAGTATTTGAAATGTAAGGTCTTCTCATTCCCCTTGCCCGCTTCCATTATTCCTGAAATCAATCTCTCCAACTATGATCCTTGGGATTTGCCAGGAAATTGTGATGAACATCAAGAGATGTATTTGTTCAGCAGCAAGGAAGCCAAGCATCGAAACGGTAGCCGCATGAACAGAACAACCACCTCTGGGTACTGGAAGGCAACAGGATCAGACAAAAGAATCACTTCATCTAATAATAATAATAATGAGGATAATAATGGCATTCTTGGAATTAGAAAAACCCTGGTATTTTACCAAGGGAAATCTCCCAATGGCACTAGAACTCACTGGATCATGCATGAATATCGCCTAGCTAGCACTAATGGTTACGACATAGGAGATTGGGTTCTGTGTCGCTTGTCGGTGAAGAAAACAAGTGCAGAGAATCATCAGAGAGTTGGAATGAGTAGTAGTAGTGTTCCAAGAGTGTTGGATTTTATGATGATAAGCAATAATAATAAGAAAGCACATTCTTCTTCATCATCCTCTTCGTCTTCTTCCACTTCAAGTAATTACGTCATGGAAGTGTCTTCTTCTGAATATCAACAACACAACACTGCATGTCCTCCTCCTTCTCATCATGGTTTTCCTCATTATTGA 729 0.4005 MEKLNFVKKNGVSRMPPGFRFQPTDEELVFQYLKCKVFSFPLPASIIPEINLSNYDPWDLPGNCDEHQEMYLFSSKEAKHRNGSRMNRTTTSGYWKATGSDKRITSSNNNNNEDNNGILGIRKTLVFYQGKSPNGTRTHWIMHEYRLASTNGYDIGDWVLCRLSVKKTSAENHQRVGMSSSSVPRVLDFMMISNNNKKAHSSSSSSSSSSTSSNYVMEVSSSEYQQHNTACPPPSHHGFPHY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182121g00001 242 Gene3D NAC domain 24 171 IPR036093 GO:0003677|GO:0006355
Stsc182121g00001 242 MobiDBLite consensus disorder prediction 85 111 - -
Stsc182121g00001 242 Pfam No apical meristem (NAM) protein 16 147 IPR003441 GO:0003677|GO:0006355
Stsc182121g00001 242 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 218 - -
Stsc182121g00001 242 MobiDBLite consensus disorder prediction 81 111 - -
Stsc182121g00001 242 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Stsc182121g00001 242 MobiDBLite consensus disorder prediction 223 242 - -
Stsc182121g00001 242 MobiDBLite consensus disorder prediction 197 218 - -
Stsc182121g00001 242 ProSiteProfiles NAC domain profile. 15 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182121g00001 Stsc-Chr182121 7520 8500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182121g00001 1 170 NAC Transcription Factor Family AT5G13180 58.382 3.01e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc182121g00001 NAM 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182121g00001 - - adu:107480040 319.316