Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182117g00004 ATGTTGGAGCTATGTCGAAAACCATTGATGTGCTTCTCATGTGGCCTTGTAGGAGGCAACTATGATGATGAGCTTCTATGGGACTTAGAGTTGAAGCCACACACCACAGGTGAATATTCAATTGCTGTGGTTCAAGCCAATTCTTCTTTGGAAGATCAAGCACAGGTGTTTACTTCTCCCTTTGCAACTCTCGTTGGTGTTTACGATGGCCATGGTGGACCTGAAGCTTCACGTTTCGTCACCAACCATCTATTCTCCTTCATTCACATGTTCTCTGCAGAGGAGGGTGGGTTATCGGAGCAAGTGATAAAGAAAGCTTTCAGTGCAACTGAGGAGGAGTTCTTGCACTCGAGGGCAGTTCTTGGTCGCAAAGCATATAATAATAATGTGGTGGCAGAGCGTTTGTCCACCGATCATAATGTTGGAGTGGAGGAGGTGAGAAAGGAGGTTGAGGCTCTTCATCCTGATGATGATTATGTTGTGGTTAATGCTAATGGAGTTTGGAGAATCAAGGGCATTATTCAGGTCTCAAGATCAATTGGAGATGTTTATCTAAAGAAGCCAGAGTTTGACAACAACTCCATCATGTTCCAGCAATGTGTGTGCCCGGTACCTCTAAAGAGAGCCGTTATGACGGCGGAGCCATCGATACTGACTCGGAAGTTGGAGGCAGAGGATTTGTTTCTGATCTTCGCATCGGATGGACTTTGGGAGCAATTAACGGACGAAGAGGCCGTTGAAATCGTTTCTAGAAGTCCAAGAAAAGGGATAGCAAAAAGATTGGTGAGAGCTGCACTAGAAGCTGTTGCAAAGAAAAAAGAAATGAGATATGAGGATTTAAAGAAAATTGAGAAAGGTGTACGGCGCCATTTCCATGATGATATTACAGTGATTGTTATATACCTTGATCACTGGCAAAATTCTGTGAATGGTAGTAGGTCAAGACATCAAGGAATCTATGATTCTGTTAGTGCTCCTGTAGATATCTACTCTCTCAATGCAGATAGGTAA 1011 0.4352 MLELCRKPLMCFSCGLVGGNYDDELLWDLELKPHTTGEYSIAVVQANSSLEDQAQVFTSPFATLVGVYDGHGGPEASRFVTNHLFSFIHMFSAEEGGLSEQVIKKAFSATEEEFLHSRAVLGRKAYNNNVVAERLSTDHNVGVEEVRKEVEALHPDDDYVVVNANGVWRIKGIIQVSRSIGDVYLKKPEFDNNSIMFQQCVCPVPLKRAVMTAEPSILTRKLEAEDLFLIFASDGLWEQLTDEEAVEIVSRSPRKGIAKRLVRAALEAVAKKKEMRYEDLKKIEKGVRRHFHDDITVIVIYLDHWQNSVNGSRSRHQGIYDSVSAPVDIYSLNADR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182117g00004 336 Gene3D - 29 310 IPR036457 -
Stsc182117g00004 336 CDD PP2Cc 45 302 IPR001932 -
Stsc182117g00004 336 PANTHER PROTEIN PHOSPHATASE 38 300 IPR015655 GO:0004722|GO:0006470
Stsc182117g00004 336 Coils Coil 263 283 - -
Stsc182117g00004 336 SMART PP2C_4 30 300 IPR001932 -
Stsc182117g00004 336 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169
Stsc182117g00004 336 Pfam Protein phosphatase 2C 117 268 IPR001932 -
Stsc182117g00004 336 SUPERFAMILY PP2C-like 43 306 IPR036457 -
Stsc182117g00004 336 ProSiteProfiles PPM-type phosphatase domain profile. 38 302 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182117g00004 Stsc-Chr182117 15740 18482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182117g00004 25 304 PP2C-type Phosphatase Gene Family AT5G06750 51.875 1.35e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182117g00004 - K01102 gmx:100802394 484.952