Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182117g00003 ATGGTCTATCTCGCCGGGTACCGTACGGTCATAACATTCCATCACCGGAGCCCAATTTCTTCGGTATCGATAACACAAAACGGCGCCACTGCAACGCCCTACGACGTCGTATTTCTTTGTCGTTGTTGCAGATACCACCGCTTCAGTAGTGCATCTGAATCTTCTTGGGAAGAATTCCCCGTGGAGAACGCGTATGAGCTGCTTGGAGTGTTGGAGACCAGCTCCTTCTCTGAGATCAAAGCGTCGTTTCACAAATTAGCGAAAGAGACTCACCCGGACCTTGCTGAGTCAAGGAACGATTCCGCTGAGTCTCGCCGATTCGTGCAAATCCTGGCTGCATACGAGATTCTTTCAGATTCTCGGAGGAGAGCCCATTATGACATGTATTTATTGTCCCAGAGAAGGCTTATGCAGAGGCATTCCAAACAGGGTTCAAAATTGCACATTTACGAATCCCATGCTAATACTTTCAAGGAGATGGAAGTTGTTGAATGGTTGAAATGGTACAGATTAACTATAAATGATATTTTGTCAGAGAAGAAGGTGGTGGATGGTACTGGCTACTTTGATGTGCTTGAGAGAGATTTCTATTCAGCTATTCATGCAGCATATTATGGTCCTGAAATTGATTCTATGCCTATGGAGCTTTTTCCTGAGTGCTTTGAGGCCGAGGAAAGGTCCTCTCATGAAACTTCTGAGGTTTTGCACTTGGTTTCCGGCCGTGATCTTTTCGGGATGGTTTGCCTAGTTGACAAGATTCCAGCGATATCATCTACTAAAAATGAAAAGTTAATTTCTTTCAGATCCTTCCATTCTGGCCTGTGCCAATCTACAACGAATAAGGAATTTCACATCAATGAAGAAAGGCAAGAGGACTTTGGAACTCATCAAACTCGCACCTCTAACATTTCAAATAGTGTATCTGATGCATATAGAGATCTAGAATTGCATGTCTCCGGCAGAGTGATTGCTACAGCATCGAGGGACCTACCTAGATGTTATTATGGTGGGTTGCAGAAAGAAGATGTTGAAGATCACATTCATGTTTTCCTCAATTCAGATGAAGATCCAAAATATATCAGTGGCAGCTTTCCAAAAAATTACTTGGCCAATGGTGCAGTTGGAAGCAGAATTCATTTGGGAACCATATCTGGGCTTGGGACCACTCCAGATGAAGGTTGTTGTTATGTCTACAACAGCAATGGTGACAGGACCCATGCAATCATGAAACATAGAACATTGCTGGTGAAACATATGCACTGGTACGAAGTGGGTGACAAAGTTTCTCTTTGTGAGTGTAGATGCACTAGAGCACGTTTACCACCAAGCAAGTTTTGGCTATTTGAACCTCGCTGTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGAAAAGATAAGAAGGGTCATACGGTACCATCACAAAGGTTGTGGGATGGCTTGGAGAATAGCGAACAAGCTGACAGAAGACTTCATCCAGCTATGTATCTGTTTGCTCTTGCATATCGTACACTCGATATTGAATATGCCAAAGCAAACAAGAAGACCTTCAGGCATGCTGTTGGAGCACAAATGTTCAGAATTCTTCATTGGTGTAGGAAACTTGTTTAA 1617 0.4335 MVYLAGYRTVITFHHRSPISSVSITQNGATATPYDVVFLCRCCRYHRFSSASESSWEEFPVENAYELLGVLETSSFSEIKASFHKLAKETHPDLAESRNDSAESRRFVQILAAYEILSDSRRRAHYDMYLLSQRRLMQRHSKQGSKLHIYESHANTFKEMEVVEWLKWYRLTINDILSEKKVVDGTGYFDVLERDFYSAIHAAYYGPEIDSMPMELFPECFEAEERSSHETSEVLHLVSGRDLFGMVCLVDKIPAISSTKNEKLISFRSFHSGLCQSTTNKEFHINEERQEDFGTHQTRTSNISNSVSDAYRDLELHVSGRVIATASRDLPRCYYGGLQKEDVEDHIHVFLNSDEDPKYISGSFPKNYLANGAVGSRIHLGTISGLGTTPDEGCCYVYNSNGDRTHAIMKHRTLLVKHMHWYEVGDKVSLCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGHTVPSQRLWDGLENSEQADRRLHPAMYLFALAYRTLDIEYAKANKKTFRHAVGAQMFRILHWCRKLV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182117g00003 538 ProSiteProfiles dnaJ domain profile. 63 130 IPR001623 -
Stsc182117g00003 538 Gene3D DnaJ domain 54 150 IPR036869 -
Stsc182117g00003 538 SMART dnaj_3 62 122 IPR001623 -
Stsc182117g00003 538 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Stsc182117g00003 538 SUPERFAMILY Chaperone J-domain 62 133 IPR036869 -
Stsc182117g00003 538 CDD DnaJ 63 119 IPR001623 -
Stsc182117g00003 538 PRINTS DnaJ domain signature 83 98 IPR001623 -
Stsc182117g00003 538 PRINTS DnaJ domain signature 65 83 IPR001623 -
Stsc182117g00003 538 PRINTS DnaJ domain signature 102 122 IPR001623 -
Stsc182117g00003 538 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 537 - -
Stsc182117g00003 538 Pfam DnaJ domain 63 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182117g00003 Stsc-Chr182117 4024 9484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182117g00003 65 127 C2H2 Transcription Factor Family AT1G74250 39.394 6.69e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182117g00003 - - gmx:100805332 852.047