Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182107g00003 AGTGGAGGAGTTCGATTCTCAGTGCAAGGGAATGGGTATTGGGTTTTGGTGTATGTGATGAATGTGAGAGGTGGTGGAGACATTGGTGGCATGTGGGTCAAAGGTAGCAGAACTTCTTGGATCACCATGACCCATAATTGGGGTGCTTCTTACCAAGCATTTTCTTCACTTTCTTCACAACCATTATCCTTCAACATCACTTCTTTCACCACCAAACACACCATTATTGCTTGGAATGTTGCTACTTCTAATTGGGCCTTTGCTCTCACTTATTCCACCAATCTCAACTTCCATTCAAACTTCTCCTTCTAA 312 0.4295 SGGVRFSVQGNGYWVLVYVMNVRGGGDIGGMWVKGSRTSWITMTHNWGASYQAFSSLSSQPLSFNITSFTTKHTIIAWNVATSNWAFALTYSTNLNFHSNFSF 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182107g00003 103 SUPERFAMILY PHL pollen allergen 2 92 IPR036749 -
Stsc182107g00003 103 Gene3D - 3 98 IPR036749 -
Stsc182107g00003 103 PRINTS Expansin signature 2 14 IPR002963 GO:0009664
Stsc182107g00003 103 PRINTS Expansin signature 79 95 IPR002963 GO:0009664
Stsc182107g00003 103 PRINTS Expansin signature 14 35 IPR002963 GO:0009664
Stsc182107g00003 103 PANTHER EXPANSIN-A15 1 93 IPR002963 GO:0009664
Stsc182107g00003 103 Pfam Expansin C-terminal domain 4 81 IPR007117 -
Stsc182107g00003 103 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 13 93 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182107g00003 Stsc-Chr182107 24300 24612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182107g00003 1 98 Expansin Gene Family AT1G12560 64.286 2.39e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182107g00003 - - tcc:18606420 166.007