Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182102g00007 ATGTCTTCATCTTCTCCTGTTCTCCCAACACCATTGGATAACAAGTACATGAAGCCCCCAGATTCGTTTCAGCTTTCGCCTGTAAGAGAAATGACTGCGAATCCATCCTCGATGCAATCTACACCGTCGAATTCCAATACCAGAAGTGCCGGACACACGTTTTCGTCCCCCGGCGTTGTCCCTTTTTCTTCAGCTTCAAAGCATGAAAGGCAGCATCAACCTTCTCCCTTTATTTCACAGACAGTAGGTGAAGACAGTGTGTCTTCTGAGCTACATTCAGCATCATTCATTTCCCAACCTCAAGAAAGCGACGATATTTCCTGGGGACCGGATCCGTTTCAAGATATGCTTGGTTTCCCTGAGAATGTTTCAGTCCAGAATGATCAGGTGGAAAATGGTGCTTGTTATATAAATGATGACAATGTCAAAAAATCTGATTTTGGGGAGTGGGTTGATAAGTTAATGTCAATTGATGATTCTTATGACCCAAATTGGAGTCAGCTTCTTGCTGATGATAACGAATTAGAACCAAAACCAAAGGTTTTACATCCGCAGAATGTACCATCTAGAGAAGTTAAAGGCCTTCCTAGTTCTCCATCAACTGCATCCCAGACGAAGCCTCGAATGCGTTGGACACCAGAACTCCACGAGGCCTTTGTGGAAGCGGTGAATCAGCTTGGTGGCGGCGAGAAGGCTACTCCCAAGGGGGTCTTGAACCTCATGAAAGTTAAGGGCCTTACAATCTACCATGTAAAAAGTCACCTACAGAAGTATAGAACGGCCAGGTACAAACCTGAGACTCCAGAAGGAACTTCTGAGAAAAAGCTGAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACCGAGGCGTTGCGGTTGCAAATGGAACTCCAGAAGCGGCTTCACGAGCAACTTGAGATCCAAAGGAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGCCTCCAGATGATGTTTGAGAAGCAGAGAGAGATGGGAGACAGCAAGTTTAGGGACTCCTCCTCCTCCCCCTTGGACGAGCCTTCTGCTCCGCCGCCAAATCCTCAAGAAGACAACTCAGAAGCTCCAAAGGAGCAAAATGAGAAACTAGGAAGCGAAAGTTGCATCACGAAAGCAGTGCCTGGAGAAAGTTCTCAGGATGAAAGCATAAACCAGAAAATGGAAGATGAAGCTAAAGTTAGCAATGAACACAAGGTGGATGATGATCAGTGTGCTGCACCACTCGCAAAACGGGTCAAGACTTGA 1284 0.4564 MSSSSPVLPTPLDNKYMKPPDSFQLSPVREMTANPSSMQSTPSNSNTRSAGHTFSSPGVVPFSSASKHERQHQPSPFISQTVGEDSVSSELHSASFISQPQESDDISWGPDPFQDMLGFPENVSVQNDQVENGACYINDDNVKKSDFGEWVDKLMSIDDSYDPNWSQLLADDNELEPKPKVLHPQNVPSREVKGLPSSPSTASQTKPRMRWTPELHEAFVEAVNQLGGGEKATPKGVLNLMKVKGLTIYHVKSHLQKYRTARYKPETPEGTSEKKLSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEKQREMGDSKFRDSSSSPLDEPSAPPPNPQEDNSEAPKEQNEKLGSESCITKAVPGESSQDESINQKMEDEAKVSNEHKVDDDQCAAPLAKRVKT 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 333 427 - -
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 395 421 - -
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 191 208 - -
Stsc182102g00007 427 Coils Coil 294 314 - -
Stsc182102g00007 427 Gene3D - 205 264 - -
Stsc182102g00007 427 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 260 IPR006447 GO:0003677
Stsc182102g00007 427 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 333 347 - -
Stsc182102g00007 427 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Stsc182102g00007 427 FunFam Myb family transcription factor 205 263 - -
Stsc182102g00007 427 Pfam MYB-CC type transfactor, LHEQLE motif 293 337 IPR025756 -
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 27 105 - -
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 376 394 - -
Stsc182102g00007 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 197 401 IPR044848 GO:0003700
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 1 112 - -
Stsc182102g00007 427 MobiDBLite consensus disorder prediction 173 208 - -
Stsc182102g00007 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182102g00007 Stsc-Chr182102 20523 24621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182102g00007 31 360 G2-like Transcription Factor Family AT3G04450 45.902 2.16e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc182102g00007 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182102g00007 - - gmx:100803267 543.502