Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182091g00001 ATGGAGGTGGAAAACCTGCCTGCGGGGTTCAGATTCCATCCCACAGATGAAGAGCTGATATCATATTATCTGATGAGGAAAGTGAGTGACACCAACTTCTCCTGCAAAGCAGTAGCAGTTGTTGACCTCAATAAATCTGAACCGTGGGATCTTCCAGGTAAGGCTACGATGGGGGAGAAGGAATGGTATTTCTTCAGCATGAAAGATCGCAAGTATCCAACTGGGCTTCGAACGAATCGAGCCACGGAATCAGGTTACTGGAAGACCACAGGAAAAGACAAAGAGATATACTGTAGCGGTGGTGGGGTCTTGATAGGGATGAAGAAAACATTGGTGTTCTATAAGGGCAGAGCTCCTAGGGGTAACAAAACCAACTGGGTTATCCACGAATATAGGCTTCATAATAATAACAACCACCATCATCCCTTCAAATCTTCTAAGGAAGAATGGGTGGTTTGTAGGGTGTTCCAAAAGAGCACAGCACCGAAAAGATCATCTCCACAAGTATCTCAAGATTATCAGGAATATTCCCCTCCTTGTAATAACGAAACCTCAGTCTTCAACGAAGAATATGGCGCTGATGCTGATGAATTCCCAAACATACCAAATTCATCAGCTGCTGCCTTCAATACCATGATGATGAATCATTCCCAATCTCTCTTTCCCCCATGGCCTTCTGGAATACTGAATAATCCAACAATCAATAATCTTTCCATGAATTCTTTGCTTCTCAAAGCATTGCAGCTTAGGACTTATCAACAAGCTGCAGCTGCAGCTAATAATACCCATCATTTTGCAGTAGCATATAACAATAATAATAATGATAATGATATTGATTGTATCCCTCAAGGCTTTTCATCACATCAACCCCTAGGAACTACTGACTTTATTAGCTCAAACCTCAACAATAGTAATGGTGTTTCTGGTTCAAGAGTTTTGGAATGCATGTCGCAGCAGCAGGAGCAACAACCACCAATGTTCGACACGGCTTCTTTCGGTGGTGAAGTTGTTTAA 1014 0.4231 MEVENLPAGFRFHPTDEELISYYLMRKVSDTNFSCKAVAVVDLNKSEPWDLPGKATMGEKEWYFFSMKDRKYPTGLRTNRATESGYWKTTGKDKEIYCSGGGVLIGMKKTLVFYKGRAPRGNKTNWVIHEYRLHNNNNHHHPFKSSKEEWVVCRVFQKSTAPKRSSPQVSQDYQEYSPPCNNETSVFNEEYGADADEFPNIPNSSAAAFNTMMMNHSQSLFPPWPSGILNNPTINNLSMNSLLLKALQLRTYQQAAAAANNTHHFAVAYNNNNNDNDIDCIPQGFSSHQPLGTTDFISSNLNNSNGVSGSRVLECMSQQQEQQPPMFDTASFGGEVV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182091g00001 337 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Stsc182091g00001 337 FunFam NAC domain-containing protein 100-like 15 162 - -
Stsc182091g00001 337 Gene3D NAC domain 15 162 IPR036093 GO:0003677|GO:0006355
Stsc182091g00001 337 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Stsc182091g00001 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 253 - -
Stsc182091g00001 337 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182091g00001 Stsc-Chr182091 677 2337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182091g00001 4 250 NAC Transcription Factor Family AT3G18400 56.569 1.28e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc182091g00001 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182091g00001 - - gmx:100776092 332.798