Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182084g00001 ATGGGTCTGTCAAATTACCCATGTGCAGCTGAAGGGGTGATACCCTTAATTGTGATGAACACGGTTATGTCAGTTGCTTTGTTGAAGAACATGTTTAGATCGGTGCTTCAAGCTGTTGGTGCCACCCCTTCTTCTTCAACTACCGATACCTATAATTATTACCCATCATCATACACTAGTTTGTTTCAAGACACAACAACGACATCAACATGTGCAAGTTCTTCTTCTAGGCCAAGAAGGGTGTCCATAACACACTACAAGTCGTTGTGCCGCAACAACAACAACAACAACAAGAGTGTTATGGTGGAGTGTTGTGTGTGTCTGACAAGGTTCGAAGCGAATCAAGAGGTTAGCGAGTTGCCTTGCAAGCATTTCTTCCACACAAGTTGTTTAGACAAATGGTTTGATAACAGACACCCCACTTGCCCTTTGTGCCGTTCATTCTCCTAG 450 0.4356 MGLSNYPCAAEGVIPLIVMNTVMSVALLKNMFRSVLQAVGATPSSSTTDTYNYYPSSYTSLFQDTTTTSTCASSSSRPRRVSITHYKSLCRNNNNNNKSVMVECCVCLTRFEANQEVSELPCKHFFHTSCLDKWFDNRHPTCPLCRSFS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182084g00001 149 PANTHER - 1 147 IPR044249 -
Stsc182084g00001 149 SUPERFAMILY RING/U-box 103 147 - -
Stsc182084g00001 149 SMART ring_2 104 145 IPR001841 -
Stsc182084g00001 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 149 IPR013083 -
Stsc182084g00001 149 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Stsc182084g00001 149 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182084g00001 Stsc-Chr182084 2070 2519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182084g00001 1 147 C3H Transcription Factor Family AT2G04240 34.667 8.58e-24 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182084g00001 K16285 - gmx:100811790 168.703