Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182076g00003 ATGAAACCCACACACTGTACTCGCCCAACCTGTCTTTCACTCACTGTCTTTGTCTTCCTCGTCGGAGTGCTGTCCGTACAACTAGCAGCGGCATCATCTTCATCTTATTCTCCTCCGCGAGACGCAATCCATCAACTTCTAAGCTTCAAAGCCACTCTCCCAAACCCTTCCCTCCTCTCCAACTGGCTCACCAACGCCAACCCATGTTCCTTCACGGGCATCACCTGCACCACCACGGCCGCCGGCGCCGCCGCAGTCACAACCATAGACCTGTCCTCCATCCCACTCAACACCAACCTCACCGCCGTGGCAACCTTCCTCCTGCCACTGGACCACCTGCAGGTGCTGTCCCTGAAATCCGCCAACCTTACCGGCCCCATTCCCTCCCCTTCAAACTCGTGCTCCTCCTCCCTAACCACCATAGATCTCTCGCAAAACGCAATCTCAGGGTCCCTAAACGACATGTCGTTCCTGTCGTCCTGCAACGCGCTCCAATCCCTGAACCTCTCTAACAACCTCCTCGAGTTCCCTGCTAACGGTTCTCCCAAATGGACACTCCGAACCGGTAGCAACCTCAAAGTAATAGACCTCTCTTATAACAAACTCACCGGCCCCAACGTCCTCCCTTGGATCCTCTCCACCGGCTGTGCCGGTCTCCGCACGCTCAATCTCAAGTCCAACAAGCTCACCGGAGTAACCGACTTCTCCGGTTGCCGGAGCCTCCAGCATTTAGACCTCTCCTCCAACAACTTCTCCGTCGCCATTCCCGCCCTCGGCGATTGCTCCACCCTCCAACACCTCGACCTCTCTGCCAACAAGTACTTCGGCGACATTACACGTGTCGTCTCCTCCTGCACCGAACTCGTTTATCTCAACGTCTCCGGCAACCAGTTCTCCAGTCCCGTTCCGTCGCTCCCCACCGGTTCCCTCCAGTTCCTTTACCTCTCCGGCAACCACTTCTCCGGTCAGATTCCGGTGGCCATGGCGGACGGCCTCTGCTCAACGCTCGTCGAACTCGATCTCTCCTCCAATAACCTCACCGGTCCAGTTCCCGAGGAGTTCACGTCGTGCTCGTCTCTCGTCTCGTTCGATATATCCTCAAACAGATTTTTCGGTAAGTTACCGATTGAGATTTTCTTGAAAATGGAGGGGCTGAAGGAGCTTTCCGTCGGTTTCAACCAGTTCGAAGGGTTACTCCCGGAGTCATTGTCGGAGATGGTGAATTTGGAATCGTTGGATCTGAGTTCAAATAACTTCTATGGTACAATCCCGAAGTGGCTGTGTCAAGATCCTAGGAATCGTTTGAAGGAACTGTTCCTACAGAATAATCACTTCACGGGTTCTATTCCCTCCACTCTCAGCAACTGTTCCAACCTGGTGGCATTGGATTTGAGCTTCAACTACCTCAATGGAACTATCCCTTCCACTTTGGGCTCACTCTCCAACCTCCGTGACTTGATCATATGGCTGAACCAGCTCACCGGAGAGATTCCGCAGGAGCTGGGTAACATAAAGACGCTGCAGAATTTGATCCTTGACTTCAATGAGTTGACAGGAAGCATCCCTGCTGGTATAAGCAATTGCTCGCAGTTGAATTGGATTTCCCTTTCAAACAACCGGCTCACAGGGGAGATTCCGCCCTGGATTGGAAAGCTTTCGAATTTGGCGATCTTGAAGCTTAGCAACAACTCATTCTCCGGCAGCATTCCGCCGGAGCTGGGCGACTGCCACAGCTTGATTTGGTTGGATCTCAACACGAATAAGCTGACGGGAGCAATCCCGCCGGAGCTTTTCAAGCAGTCGGGGAAGATTGCGGTGAATTTCATCAGCGGGAAGACTTATGTTTACATAAAGAATGATGGGAGCAAGGAGTGCCATGGCGCCGGGAACTTGCTGGAGTTTGCGGGGATCAGCCAGCAGCAGCTCAACAGGATTTCAACAAGGAACCCCTGCAACTTCACCAGAGTCTATGGAGGTAAGCTTCAGCCAACATTTAACCATAACGGTTCCATGATCTTCTTGGACATTTCACACAACATGTTGTCTGGTACTATTCCTAAGGAGATTGGTACAATGTACTATCTTTATATTCTCAATTTGGGACATAATAACATTTCTGGTAGCATCCCTCAAGAGCTTGGCAGCATGAAGAACCTCAACATTCTTGATCTCTCCCACAATAGGCTCCAAGGCCCCATTCCACAGAGCTTGACTAGTCTCTCGCTGTTAACAGAGATTGATTTTTCTAACAATTTCTTGGCCGGCATGATTCCGGAATCTGGTCAATTCGACACCTTTCCGGCATCGAGATTCCAGAACAATTCTGGTCTGTGTGGGGTGCCTCTTCCTCCGTGCGCTGCGGACTCAGGTACAAATGGTGCTCAGAATCAGAAGTCTAATAACAGGAGGCCGGCGTCTCTTGCAGGGAGTGTGGCCATGGGGTTGCTCTTCTCCCTCTTCTGCATATTTGGTTTGATGATCATTGCCATTGAGGCTAGGAAGAGGAGGAAGAAGAAGGAAGCAGCGCTCGAGGCCTATGTCGAGGGAAATTCCCATTCTGGTACTGCCAACGGTGGCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTACATTTGGAGATCTTCTTGAAGCCACCAATGGGTTCCACAATGATAGTCTTATTGGCTCCGGAGGGTTTGGTGATGTGTACAAAGCTCAGTTGAAGGATGGAAGTATTGTTGCCATCAAGAAACTGATTCATGTAAGTGGACAAGGAGATAGAGAATTCACTGCTGAAATGGAAACCATTGGGAAAATCAAGCACAGGAACCTTGTTCCTCTTCTTGGATACTGCAAGGTTGGGGAAGAGAGGCTGTTGGTATATGAGTACATGAAATATGGAAGCCTTGAAGATGTTCTGCATGATCCGAAGAAAGCCGGCATCAAGTTGAATTGGGCTGTGAGGAGAAAAATCGCCATTGGCGCGGCCAGGGGATTGGCTTTCCTTCACCACAATTGTATCCCTCACATCATTCATAGAGACATGAAGTCAAGCAATGTGTTGTTAGATGAGAATCTTGAAGCAAGAGTCTCCGATTTTGGAATGGCGAGACTAATGAGTGCAATGGATACACATTTGAGTGTTAGCACACTGGCAGGGACACCTGGGTATGTGCCTCCAGAGTACTATCAAAGCTTTAGATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGGGAAAAGGCCAACAGATTCAGCTGA 3345 0.4816 MKPTHCTRPTCLSLTVFVFLVGVLSVQLAAASSSSYSPPRDAIHQLLSFKATLPNPSLLSNWLTNANPCSFTGITCTTTAAGAAAVTTIDLSSIPLNTNLTAVATFLLPLDHLQVLSLKSANLTGPIPSPSNSCSSSLTTIDLSQNAISGSLNDMSFLSSCNALQSLNLSNNLLEFPANGSPKWTLRTGSNLKVIDLSYNKLTGPNVLPWILSTGCAGLRTLNLKSNKLTGVTDFSGCRSLQHLDLSSNNFSVAIPALGDCSTLQHLDLSANKYFGDITRVVSSCTELVYLNVSGNQFSSPVPSLPTGSLQFLYLSGNHFSGQIPVAMADGLCSTLVELDLSSNNLTGPVPEEFTSCSSLVSFDISSNRFFGKLPIEIFLKMEGLKELSVGFNQFEGLLPESLSEMVNLESLDLSSNNFYGTIPKWLCQDPRNRLKELFLQNNHFTGSIPSTLSNCSNLVALDLSFNYLNGTIPSTLGSLSNLRDLIIWLNQLTGEIPQELGNIKTLQNLILDFNELTGSIPAGISNCSQLNWISLSNNRLTGEIPPWIGKLSNLAILKLSNNSFSGSIPPELGDCHSLIWLDLNTNKLTGAIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGTIPKEIGTMYYLYILNLGHNNISGSIPQELGSMKNLNILDLSHNRLQGPIPQSLTSLSLLTEIDFSNNFLAGMIPESGQFDTFPASRFQNNSGLCGVPLPPCAADSGTNGAQNQKSNNRRPASLAGSVAMGLLFSLFCIFGLMIIAIEARKRRKKKEAALEAYVEGNSHSGTANGGWXXXXXXXXXXXXXXXXXXXXXXLTFGDLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKLNWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNREKANRFS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182076g00003 1114 Pfam Brassinosteroid receptor island domain 602 666 IPR045381 -
Stsc182076g00003 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Stsc182076g00003 1114 FunFam Os07g0541700 protein 971 1061 - -
Stsc182076g00003 1114 Coils Coil 1106 1111 - -
Stsc182076g00003 1114 FunFam Serine/threonine-protein kinase BRI1-like 1 609 666 - -
Stsc182076g00003 1114 Pfam Leucine rich repeat 695 751 IPR001611 GO:0005515
Stsc182076g00003 1114 Pfam Leucine rich repeat 190 251 IPR001611 GO:0005515
Stsc182076g00003 1114 Pfam Leucine rich repeat 359 419 IPR001611 GO:0005515
Stsc182076g00003 1114 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Stsc182076g00003 1114 FunFam Leucine-rich repeat receptor protein kinase EMS1 523 612 - -
Stsc182076g00003 1114 Gene3D Transferase(Phosphotransferase) domain 1 971 1078 - -
Stsc182076g00003 1114 Gene3D Ribonuclease Inhibitor 46 785 IPR032675 -
Stsc182076g00003 1114 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 434 1074 - -
Stsc182076g00003 1114 ProSitePatterns Protein kinases ATP-binding region signature. 901 924 IPR017441 GO:0005524
Stsc182076g00003 1114 SMART serkin_6 895 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182076g00003 1114 SUPERFAMILY L domain-like 108 327 - -
Stsc182076g00003 1114 ProSiteProfiles Leucine-rich repeat profile. 218 239 IPR001611 GO:0005515
Stsc182076g00003 1114 FunFam serine/threonine-protein kinase BRI1-like 2 873 970 - -
Stsc182076g00003 1114 PRINTS Leucine-rich repeat signature 716 729 - -
Stsc182076g00003 1114 PRINTS Leucine-rich repeat signature 336 349 - -
Stsc182076g00003 1114 ProSiteProfiles Protein kinase domain profile. 895 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182076g00003 1114 SMART LRR_typ_2 552 576 IPR003591 -
Stsc182076g00003 1114 SMART LRR_typ_2 238 261 IPR003591 -
Stsc182076g00003 1114 SMART LRR_typ_2 382 405 IPR003591 -
Stsc182076g00003 1114 SMART LRR_typ_2 716 740 IPR003591 -
Stsc182076g00003 1114 SMART LRR_typ_2 406 430 IPR003591 -
Stsc182076g00003 1114 SMART LRR_typ_2 577 600 IPR003591 -
Stsc182076g00003 1114 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 433 522 - -
Stsc182076g00003 1114 SUPERFAMILY L domain-like 663 782 - -
Stsc182076g00003 1114 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 179 432 - -
Stsc182076g00003 1114 SUPERFAMILY RNI-like 281 596 - -
Stsc182076g00003 1114 Pfam Leucine Rich repeat 333 348 IPR001611 GO:0005515
Stsc182076g00003 1114 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 663 784 - -
Stsc182076g00003 1114 SUPERFAMILY Protein kinase-like (PK-like) 879 1073 IPR011009 -
Stsc182076g00003 1114 Gene3D - 607 667 - -
Stsc182076g00003 1114 Pfam Leucine rich repeat N-terminal domain 43 76 IPR013210 -
Stsc182076g00003 1114 Gene3D Phosphorylase Kinase; domain 1 866 970 - -
Stsc182076g00003 1114 Pfam Protein kinase domain 895 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182076g00003 Stsc-Chr182076 14727 19036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182076g00003 43 1075 Receptor kinase-like Gene Family AT4G39400 65.448 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Stsc182076g00003 Pkinase 4.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182076g00003 K13415 - gmx:100499629 1507.27