Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182073g00002 ATGGGTAACTGTCTAGATTCTTCTGCAAAAGTTGATGCAGCTCAGAGTTCTAGAGCCAATTCTGCAATCTCAAAAACTCCCCCCTCCACCTTACAAATTCCATCACACAGCGAAAAAAGCAATGCTTCCACTCTTCCTACACCGAGGTCTGAGGGTGAAATCTTGTCCTCTCCGAATCTTAAGGCCTTCACATTCAACGAGCTCAAGAATGCCACCCGGAATTTTCGTCCCGACAGCCTTCTCGGTGAAGGCGGTTTCGGCTATGTCTACAAGGGATGGATTGACGAACACACATTCGTGGCTTCAAAACCCGGATCAGGAATGGTTGTTGCTGTAAAGAAGCTTAAGCCTGAAAGTTTTCAGGGTCATAGGGAGTGGCTGACTGAGGTTAACTATCTTGGGCAACTGCACCATCCTAATCTTGTTAAATTGATTGGATACTGCTTGGAAGGAGAGAACCGGCTATTGGTCTATGAGTTCATGCCAAAAGGGAGCTTAGAGAATCACCTATTTAGAAGAGGACCACAACCACTCTCTTGGGCAGTGAGGATGAAGGTGGCCATTGGTGCTGCCAGAGGACTCACTTTTCTTCACAACGCCAAATCTCAAGTCATATACCGCGATTTTAAAGCTTCTAACATCCTGCTAGATGCGGAGTTCAATGCTAAACTATCTGATTTCGGCCTGGCCAAGGCGGGTCCAACCGGGGATAGAACTCATGTATCTACCCAAGTCGTGGGAACTCAAGGATACGCGGCACCTGAATATGTTGCAACAGGTCGGCTAACTGCGAAAAGTGATGTATATAGCTTTGGAGTTGTGATGCTGGAACTCTTGTCCGGAAGACGGGCCGTGGATAAAACAATATCCGGCATGGAGCAGAATTTGGTGGACTGGGCAAAACCATATTTGGGGGACAAGCGAAGGCTGTTTCGGATAATGGATACCAAACTGGAGGGACAATACCCGCAAAAGGCAGCCTTTATGGCTGCCACACTTGCTCTTAAATGCCTTAGCAGTGAAGCCAAGGCAAGGCCTGCCATGACAGAGGTTTTAGAAACTCTAGAACAGATAGAAGCCCCCAAAACCGCAGGCCGACATTCCCATTCGGAACATCTTAGAGTACACACTCCCGTGAGGAGGTCACCGGCACGAAACCGGTCACCTTTACATCCAACTCCTTTAGAAAAATGTAAGGATATTTGTTGA 1209 0.4756 MGNCLDSSAKVDAAQSSRANSAISKTPPSTLQIPSHSEKSNASTLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFVASKPGSGMVVAVKKLKPESFQGHREWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWAVRMKVAIGAARGLTFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAVDKTISGMEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKAAFMAATLALKCLSSEAKARPAMTEVLETLEQIEAPKTAGRHSHSEHLRVHTPVRRSPARNRSPLHPTPLEKCKDIC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182073g00002 402 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Stsc182073g00002 402 CDD STKc_IRAK 81 358 - -
Stsc182073g00002 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Stsc182073g00002 402 SUPERFAMILY Protein kinase-like (PK-like) 47 355 IPR011009 -
Stsc182073g00002 402 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Stsc182073g00002 402 MobiDBLite consensus disorder prediction 1 54 - -
Stsc182073g00002 402 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Stsc182073g00002 402 Pfam Protein tyrosine and serine/threonine kinase 79 355 IPR001245 GO:0004672|GO:0006468
Stsc182073g00002 402 MobiDBLite consensus disorder prediction 362 378 - -
Stsc182073g00002 402 MobiDBLite consensus disorder prediction 9 54 - -
Stsc182073g00002 402 Gene3D Transferase(Phosphotransferase) domain 1 161 379 - -
Stsc182073g00002 402 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182073g00002 402 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Stsc182073g00002 402 MobiDBLite consensus disorder prediction 362 396 - -
Stsc182073g00002 402 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182073g00002 Stsc-Chr182073 19867 23113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182073g00002 12 355 Glycoside Hydrolase AT3G07070 48.580 8.21e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc182073g00002 PK_Tyr_Ser-Thr 6.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182073g00002 - - gmx:100809778 724.546