Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182072g00001 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCATCAACTACATCAAGCTTCATGGTGAAGGCTGTTGGAGATCTCTTCCCAAAGCTGCTGGTTTATTGAGATGTGGGAAGAGCTGCAGATTGAGATGGATAAATTACCTTAGACCTGATCTAAAGAGAGGTAACTTCACTGAAGAAGAAGATGAACTCATCATTAACCTCCACAGCTTACTTGGAAACAAATGGTCTTTGATAGCGGCAAGGTTACCCGGAAGAACCGATAACGAAATCAAAAATTATTGGAACACTCACATCAAAAGAAAACTCTATAGTCGGGGGATCGATCCTCAAACGCACCGGCCGCTTAACACGGCCGGAGCTGTAATAACCACAACAGCAGCCACAACCACAACCAGAAGCAATAAGAAAAGCATGGACAAAAATAATAACATTGTTATTGGCACAAAAATTCTTGATAATAACAACAACAAGGAAAAGAATATCAAGTTTCAATTGGTGAGTGACTTGGTTTGCGAAGATTCATCAAATAGTAGTAGTGGTGTTACCATTGAAGAACAAACGTTAACATACCCTCTTCATCATCATCAACAACTCAACTTGGATCTTTCCATTGGTCTTCCATCTCAACAACAAGCTTCTTCAAATTCCATGAACCAAGAAAACAAGAAGTTGAAGCAAGAACAAGAAGGAGGACATGATGTTTTCTATAATCATCAATGGTATGGCAATAATAATAATAAAAGTAGTGTGTGTTTATGTTATGGTTTAGGGTTTGAAAGTAACAATAATAACAAAGTGTGTAGCTGCAAAGGTGCCATTGTTGGTGCTACGGCGGTTACTACAACCGCCGCTGGTAATAGCTTGTATAGATTTTATAGACCTATGAATATTTAG 936 0.39 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNTAGAVITTTAATTTTRSNKKSMDKNNNIVIGTKILDNNNNKEKNIKFQLVSDLVCEDSSNSSSGVTIEEQTLTYPLHHHQQLNLDLSIGLPSQQQASSNSMNQENKKLKQEQEGGHDVFYNHQWYGNNNNKSSVCLCYGLGFESNNNNKVCSCKGAIVGATAVTTTAAGNSLYRFYRPMNI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182072g00001 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc182072g00001 311 CDD SANT 69 112 IPR001005 -
Stsc182072g00001 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc182072g00001 311 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Stsc182072g00001 311 CDD SANT 16 61 IPR001005 -
Stsc182072g00001 311 SMART sant 13 63 IPR001005 -
Stsc182072g00001 311 SMART sant 66 114 IPR001005 -
Stsc182072g00001 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc182072g00001 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc182072g00001 311 Gene3D - 14 66 - -
Stsc182072g00001 311 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc182072g00001 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc182072g00001 311 Gene3D - 68 158 - -
Stsc182072g00001 311 FunFam MYB-related transcription factor 13 66 - -
Stsc182072g00001 311 FunFam Myb transcription factor 68 137 - -
Stsc182072g00001 311 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182072g00001 Stsc-Chr182072 2285 3826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182072g00001 1 225 MYB Transcription Factor Family AT2G16720 60.889 3.91e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc182072g00001 Myb_DNA-binding 4.6e-15 CL0123