Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182054g00003 ATGGGTTGCTTCTCCTGTTTCGATTCGAGGGAGGATCAGAAACTGAATCCCCATGGAGCAGACAAGCTGAGGTCAAGAAGTAACGGGGGTTCCAAAAGGGAGCTGCCTGCTCCCAAGGATGGGTCTGGTGTTCAAATTGCTGCTCAGACTTTTACTATACGTGAGCTTGCAGCCGCAACTAAGAACTTCAGGCCGGAGTCCTTCATAGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGGAAGCTGGAGAGCACTGGTCAGATTGTTGCTGTTAAACAGTTAGACAGAAATGGTCTTCAGGGTAATCGGGAATTCCTTGTAGAAGTTCTCATGCTTAGTCTTTTACATCACCCTAATCTTGTGAATCTCATCGGATATTGTGCGGATGGTGAACAGCGCCTCCTTGTCTATGAATTTATGCCATTGGGATCATTGGAAGACCACCTTCATGATCTTCCCCCTGATAAAGAACCATTGGATTGGAACACTAGGATGAAAATAGCTGCAGGGGCTGCAAAAGGACTAGAATACCTGCATGACAAGGCAAATCCTCCAGTCATTTATAGAGACTTCAAGTCATCTAATATATTACTTGACGAAGGATACCACCCAAAGCTTTCTGACTTTGGTCTTGCAAAGCTAGGTCCTGTGGGCGACAAGTCACACGTTTCTACGCGTGTGATGGGAACTTACGGTTATTGTGCTCCTGAGTATGCTATGACTGGACAACTGACTGTCAAATCTGACGTATACAGTTTTGGGGTGGTATTCTTAGAGCTGATTACAGGCCGTAAAGCAATTGACAGCACCCAACCACATGGAGAACAAAACCTTGTGACATGGGCACGTCCACTGTTCAATGACCGCAGGAAGTTCTCAAAGCTGGCTGATCCAAGGCTGCAGGGGAGGTTTCCTATGCGGGGTCTTTACCAGGCTCTAGCTGTGGCATCCATGTGCATCCAAGAATCCGCTGCCACACGTCCTCTCATTGGGGATGTGGTGACAGCCCTCTCTTATTTGGCCAACCAGGCATATGACCCCAACAATGCTGGGCATGGTTATAGGGGTTCTGGTGATGACAAAAGGAACAGAGATGATAAAGGTGCAAGATTATTGAAAAATGATGAAGCTGGAGGATCTGGACGCAGATGGGACTTGGAAGGATCTGAGAAAGATGAGTCTCCCAGAGAAACTGCGAGGATGTTGAACAGAGATCTTGACAGAGAACGTGCTGTGGCTGAAGCCAAAATGTGGGGAGAGAACTGGAGAGAGAAAAGAAGACAGAGTTTGCAACCGGGAAGTTTTGATGCTACCAATGCTTAG 1323 0.4732 MGCFSCFDSREDQKLNPHGADKLRSRSNGGSKRELPAPKDGSGVQIAAQTFTIRELAAATKNFRPESFIGEGGFGRVYKGKLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQAYDPNNAGHGYRGSGDDKRNRDDKGARLLKNDEAGGSGRRWDLEGSEKDESPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSLQPGSFDATNA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182054g00003 440 Gene3D Phosphorylase Kinase; domain 1 31 139 - -
Stsc182054g00003 440 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182054g00003 440 FunFam Serine/threonine-protein kinase PBS1 140 354 - -
Stsc182054g00003 440 Pfam Protein kinase domain 66 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182054g00003 440 Gene3D Transferase(Phosphotransferase) domain 1 140 353 - -
Stsc182054g00003 440 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Stsc182054g00003 440 MobiDBLite consensus disorder prediction 355 406 - -
Stsc182054g00003 440 MobiDBLite consensus disorder prediction 419 440 - -
Stsc182054g00003 440 PANTHER OS07G0668900 PROTEIN 3 349 - -
Stsc182054g00003 440 CDD STKc_IRAK 69 337 - -
Stsc182054g00003 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Stsc182054g00003 440 MobiDBLite consensus disorder prediction 15 29 - -
Stsc182054g00003 440 MobiDBLite consensus disorder prediction 15 42 - -
Stsc182054g00003 440 MobiDBLite consensus disorder prediction 348 406 - -
Stsc182054g00003 440 SUPERFAMILY Protein kinase-like (PK-like) 47 335 IPR011009 -
Stsc182054g00003 440 FunFam Serine/threonine-protein kinase PBS1 36 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182054g00003 Stsc-Chr182054 3414 8417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182054g00003 1 427 Glycoside Hydrolase AT3G07070 57.883 6.93e-170 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc182054g00003 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182054g00003 K13430 - tcc:18608901 804.668