Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182048g00003 ATGGCCTCCGATTCGTCTCCCTTCAACAACGATCCTTCGTCCCCCGACGATTCCCCCTCAAGCCCAATCGGCAACACCTTCTCCTCCCCCGGCGATGCTGCTCGCCGGAATCGCCGCCGCGGCCGCTCTTCCACACCCTCCGCTTTTGATACCCCGCCAACGCACCGTTCCCGATTTGCCGCAGCCGCCGATGCCACTCCTACTCCGTCCCGTTCCAGGCCGAGATCCAGAGGCGGCGGCCGTGCTCCTTTCACGCCGACCTCCACCGATGACATTCCGGCGTCTTCTGAAGGCGGTGATGGCTTCGACATGGACGACGCCAGGCCTACCTTCGTTTGGGGCACGAACATCAGCGTCGAGGACGTTAACGACGCGATTCAGAGGTTCCTGAGGGACTTTCGAGAAGCTTCTTCGTCACAGAATGATGATGATGACATGTTGCACGCCGAAGGGAAGTACGAGAAGCTCATCAAACAGGTGATTGAAGTTGAGGGAGATTCTCTTGATGTTGATGCGCATGATGTGTTCGAACATGACCCTGATTTGTACACCAAGATGGTTAGGTACCCTCTCGAGGTTCTTGCCATCTTTGACTTGGTTCTTATGAATATGGTTAGCAGGATTAAGCCTATGTTCGAGAAGCACATTCAGACTCGGATTTTCAATCTCAAATCCTCTACTACAATGAGGAATTTGAATCCTACTGATATTGAGAGGATGGTGTCAATAAAGGGTATGATTATAAGGTGTAGCTCAATCATACCGGAAATTCGGGAAGCTATATTTAGGTGTCTTGTGTGTGGGAACTGCACCGATCCTGTTGCTGTAGAGAGAGGGCGTATAACTGAGCCAACGATATGCTTGAGGGAAGAGTGTCAATCCAGGAACTCCATGACACTGCTTCACAACCGATGCAGGTTTACTGATAAACAAATTGTGAGGGTCCAGGAGACACCTGACGAGATACCTGAAGGCGGAACTCCTCACACAGTCAGCTTGCTGATGCATGACAAGCTTGTAGATGCTGGAAAGCCAGGAGATAGAATTGAGGTGACTGGTATATATAGAGCTATGAGTGTCAGAATTGGACCAACTCAGCGAACTGTGAAGTCATTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCAAGGATGCTGGTAGACGATGCTATGGACATTGACAATAGCCAGGGCAGAAATCCAGAAGAGGTTCACTTCGATAAAGAAAGGGTGGGTCAACTGAAAGAGCTCTCAAAACAGCCAGATATATATGAAAAACTGACAAAGTCGTTGGCACCAAACATCTGGGAACTAGACGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGCGATATCAATATTCTTCTTGTTGGTGATCCTGGTACTAGCAAGTCTCAGCTTCTTCAATACATTCACAAACTATCTCCTCGTGGCATCTACACTAGTGGAAGGGGGAGTTCTGCCGTTGGATTGACTGCTTATGTCACCAAGGACCCTGAAACAGGGGAAACTGTTCTTGAAAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATTTGCTGTATAGATGAATTTGACAAAATGTCTGATAATGCAAGGAGCATGTTACATGAGGTGATGGAACAGCAAACTGTTTCTATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCCGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACACTTCTGTCCAGGTTCGATTTAATTTACTTAATTCTTGACAAGGCGGATGAACAGACCGACCGACGACTTGCCAAACATATTGTTTCCTTGCACTTTGAGAATCCCGAGAGCTTGGAGCAAGATGTGTTGGACATATCTACATTAACTGATTATGTGAGCTATGCCCGAAAGCACATACACCCCCAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTGGATATAAGAAGAAGAGGAAACTTTCCTGGAAGTAGCAAAAAGGTTATAACAGCAACACCAAGACAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCCCGGATTCGCTTCTCAGATTGGGTTGAAAAGCGTGATGTAATGGAGGCATTTCGGCTTCTCGAAGTTGCAATGCAGCAGTCTGCAACTGATCACGCTACTGGAACCATCGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAAGCTTTGTTATTGGAAGAGTTGAAGAAACAGAACACTAGCAGTGAAGTTCAACTTACTGATCTAAGGAATGCAGTTGCTACTCTCGCCAGTGAAGGATTCGTTACCATGCATGGTGAAAGCGTTAAAAGATCATGA 2448 0.4694 MASDSSPFNNDPSSPDDSPSSPIGNTFSSPGDAARRNRRRGRSSTPSAFDTPPTHRSRFAAAADATPTPSRSRPRSRGGGRAPFTPTSTDDIPASSEGGDGFDMDDARPTFVWGTNISVEDVNDAIQRFLRDFREASSSQNDDDDMLHAEGKYEKLIKQVIEVEGDSLDVDAHDVFEHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRIKPMFEKHIQTRIFNLKSSTTMRNLNPTDIERMVSIKGMIIRCSSIIPEIREAIFRCLVCGNCTDPVAVERGRITEPTICLREECQSRNSMTLLHNRCRFTDKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRIEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMLVDDAMDIDNSQGRNPEEVHFDKERVGQLKELSKQPDIYEKLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESLEQDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVDIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSDWVEKRDVMEAFRLLEVAMQQSATDHATGTIDMDLITTGVSASERMRREALLLEELKKQNTSSEVQLTDLRNAVATLASEGFVTMHGESVKRS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182048g00003 815 MobiDBLite consensus disorder prediction 1 106 - -
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein family signature 557 570 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein family signature 581 593 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 616 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 755 IPR027417 -
Stsc182048g00003 815 Gene3D - 116 223 - -
Stsc182048g00003 815 MobiDBLite consensus disorder prediction 1 32 - -
Stsc182048g00003 815 SMART AAA_5 470 620 IPR003593 GO:0016887
Stsc182048g00003 815 Pfam MCM N-terminal domain 125 225 IPR027925 -
Stsc182048g00003 815 Gene3D - 229 368 IPR012340 -
Stsc182048g00003 815 FunFam DNA helicase 409 747 - -
Stsc182048g00003 815 Gene3D - 409 757 IPR027417 -
Stsc182048g00003 815 ProSitePatterns MCM family signature. 537 545 IPR018525 GO:0003677|GO:0005524|GO:0006260
Stsc182048g00003 815 Pfam MCM AAA-lid domain 654 740 IPR041562 -
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 742 751 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 590 607 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 251 264 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 444 455 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Stsc182048g00003 815 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 302 314 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Stsc182048g00003 815 SMART mcm 225 742 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 Coils Coil 775 795 - -
Stsc182048g00003 815 Gene3D - 256 308 - -
Stsc182048g00003 815 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 124 780 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 FunFam DNA helicase 256 308 - -
Stsc182048g00003 815 CDD MCM4 431 740 - -
Stsc182048g00003 815 Pfam MCM OB domain 229 358 IPR033762 -
Stsc182048g00003 815 SUPERFAMILY Nucleic acid-binding proteins 148 379 IPR012340 -
Stsc182048g00003 815 Pfam MCM P-loop domain 417 638 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc182048g00003 815 ProSiteProfiles MCM family domain profile. 428 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182048g00003 Stsc-Chr182048 17876 23498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182048g00003 1 814 Core DNA Replication Machinery Family AT2G16440 71.831 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182048g00003 K02212 - gmx:100782586 1346.64