Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182048g00001 ATGGAAGGGGAAGAAGGGGAAGAAGCATTGAAGGGTATTAGTGGTAGTGGCAGTAGTAGTAGTAGTAGTAGGTGTGTTGCAAAGTGTTCAGATTGTGGGAACCAAGCAAAGAAGGATTGCTCATATTCAAGGTGCAGAACTTGTTGCAAGAACAAAGGGTTTCACTGCCCAACCCATGTTAGAAGCACTTGGATCCCTGTCCATACAAGACGCCACAAATCATCACCATCATCATCATCATCCCCACTGCTACCCATGGATCATCATCAACAACACTTCCTTCATTCACATATCCCTAAAAGGCACAAGCACATCCCAGAGGAGTTTCCAGCAAGTATGAGTTCGATGGGAATATTCAGGTGCGTTAGGGTGCGTTCCATGGATGAAAGTGTTAATGAAATTGCGTACCAAACATCTGTCAACATTGGAGGACATCTTTTCACTGGTCTTCTTTATGATCAAGGTCCTCATCATCATCATCATCAACCACCACCACCAAGATCTATAGATTATCCTCCTCATCATCATCATCATGCTCATCAGCTACAAAGTAATAACAATAATAATATTATTGTTGATGCTCCTCTTCCTCACCATGATCAACCTTTTTTATCATCTTCTTCTTCATCTCATCCTTTACTACCCCTACCTTCTCCTTTTGTTAGGCCTTCTATGCCATATTATTTTTCATCACCCCCTAGCTCTGATTATCCTAAACCTTGA 723 0.4177 MEGEEGEEALKGISGSGSSSSSSRCVAKCSDCGNQAKKDCSYSRCRTCCKNKGFHCPTHVRSTWIPVHTRRHKSSPSSSSSPLLPMDHHQQHFLHSHIPKRHKHIPEEFPASMSSMGIFRCVRVRSMDESVNEIAYQTSVNIGGHLFTGLLYDQGPHHHHHQPPPPRSIDYPPHHHHHAHQLQSNNNNNIIVDAPLPHHDQPFLSSSSSSHPLLPLPSPFVRPSMPYYFSSPPSSDYPKP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182048g00001 240 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 14 186 IPR007818 GO:0003700|GO:0006355
Stsc182048g00001 240 Pfam Domain of unknown function (DUF702) 27 157 - -
Stsc182048g00001 240 MobiDBLite consensus disorder prediction 153 209 - -
Stsc182048g00001 240 NCBIfam LRP1 C-terminal domain 109 156 IPR006511 -
Stsc182048g00001 240 NCBIfam putative zinc finger domain, LRP1 type 28 69 IPR006510 -
Stsc182048g00001 240 MobiDBLite consensus disorder prediction 1 23 - -
Stsc182048g00001 240 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182048g00001 Stsc-Chr182048 2383 3702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182048g00001 28 231 C2H2 Transcription Factor Family AT2G21400 42.381 9.36e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc182048g00001 DUF702 7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182048g00001 - - aip:110269564 254.988