Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182042g00007 ATGTTGCAGCAGTTGAAGCTACACTCACTCCCTTCATCATCTTCTTCCACTTACCTTTCCCCTCAAAACCGCTCCTTTTTCTCTCCAAACTCTCTTCCTTTTTCTTCTGTTACTCCCAAACCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACAACAAGACCTTCTCCTCCACATCTTCTCCTCCGCCGCCTCCTTCTTCTTCTTCAGTTGGAGCTTTACCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCGCTTACCGTCACTCCTAGGCCTCCGGAGTTTGCCCCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAGGGTTATGTGCTGCTTCAGTTTGCACCTGCAATTGCTTCGCGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCATTATCAGTGGGTGAAATGGGAACTGTGATTAGCCTTGGAGCAAGGGAGTCTTGTGAATTTTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGCCACTTGTTTAACCTCAATGTTCAAAACAAGATTGTGAATGTCGACGAAAACATCTACATCCCTATTTCAAAAGCAGAGTTAACAGTTTTGAGCTCAATTTTCAATTTTATTATGCCATACCTTCTTGGTTGGCACACCTTTGCGAACTCGATAAAGCCAGACGATTCAAGAGGAGGGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGAATGTGA 789 0.4512 MLQQLKLHSLPSSSSSTYLSPQNRSFFSPNSLPFSSVTPKPFSITCRHSDLFDNKTFSSTSSPPPPPSSSSVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVEPLPDGSGHLFNLNVQNKIVNVDENIYIPISKAELTVLSSIFNFIMPYLLGWHTFANSIKPDDSRGGNNANPTYGGDYEWNRM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182042g00007 262 MobiDBLite consensus disorder prediction 1 21 - -
Stsc182042g00007 262 MobiDBLite consensus disorder prediction 55 74 - -
Stsc182042g00007 262 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 70 245 - -
Stsc182042g00007 262 SUPERFAMILY ssDNA-binding transcriptional regulator domain 77 261 IPR009044 GO:0003677|GO:0006355
Stsc182042g00007 262 Pfam Whirly transcription factor 85 219 IPR013742 GO:0003697|GO:0006355|GO:0006952
Stsc182042g00007 262 Gene3D Transcriptional Coactivator Pc4; Chain A 72 248 IPR009044 GO:0003677|GO:0006355
Stsc182042g00007 262 MobiDBLite consensus disorder prediction 241 262 - -
Stsc182042g00007 262 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 52 261 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182042g00007 Stsc-Chr182042 23332 26008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182042g00007 38 261 Whirly Transcription Factor Family AT1G14410 68.750 1.43e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Stsc182042g00007 Whirly 1.2e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182042g00007 K26559 - gmx:100789252 365.54