Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182042g00005 ATGTTAGTATTATTACTACGCAGTGCCGCATCTGGTGTTTTCACATACACATATCCATGCAAATGCAAATGCAAGCCACCACCACCAACAAGAACAACCCTCTTCCTTCCAGTTCATCCCAATTCCACCATCTTTTGTTCTTCATCCGATCATGCATTTTCTACACCCAAGCTGGGTTACACCCCTCCAGAGGAACTCTTCTCCCTCGACGTCGAACTCAACCCTAGCAAAACACAAGAGCCAAGATCTTGGTTTGGTCCAAATGGGCAGTATATCAAAGAGCTTCCCTGTCCCAGTTGCAGGGGAAGGGGTTATACTCCTTGTACAGAATGTGGCATAGAAAGATCCAGATCAGATTGTCCTAAATGTAACGGAAAGGGTATACTCACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCCATTGATGAGAAACCATGGGAAACAGCACGTTCAATTTCACCACTTAAAGTGAAGGAAGATGATGAAGTAGACAAGTTAGAGATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTAAAGATTAGTCGTTCATTGAAAAGTCTAAATGCGAAAACCGGACTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCTCAAAGAGTGGCCGCTATCAAGAAAGCCAAGGGAACTATTGCAGCAAGAAAGCATACTTCCAAGACTATGAAAGCTTTCTTTAGTGATCCGATAAACCGTCAGAAAAGGAGCATGTCCATGAAGGGAGTGAAATTCTATTGCCAACACTGTGGACGCGAAGGGCATAGGAGACACTACTGTCCGGAACTCAAGGATTCTTCTGTTGACCGGCGATTCACATGCAAGCTATGTGGGGAAAAGGGCCACAACAGAAGAACATGCAACAAGTTAAAGATAAGCCATAGCAATGGAAGAGTTATAAAGCACAATAGGTGTAAAATATGTCGCCTATATGGCCATAACCAGAGGACGTGCCCTCAAGTTTTTCCCAACAAAAGAAGGGACATTGTCTCGAATAAAGCATACAAGTGTAGGTTGTGCCACAAAGAGGGGCACAATATTAGGACCTGTCCTAGCAGAGTTGTTACTGAAAACTCTCAAGATCAGTAG 1161 0.435 MLVLLLRSAASGVFTYTYPCKCKCKPPPPTRTTLFLPVHPNSTIFCSSSDHAFSTPKLGYTPPEELFSLDVELNPSKTQEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGILTCHQCSGDCVIWEESIDEKPWETARSISPLKVKEDDEVDKLEIKLDVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTIAARKHTSKTMKAFFSDPINRQKRSMSMKGVKFYCQHCGREGHRRHYCPELKDSSVDRRFTCKLCGEKGHNRRTCNKLKISHSNGRVIKHNRCKICRLYGHNQRTCPQVFPNKRRDIVSNKAYKCRLCHKEGHNIRTCPSRVVTENSQDQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182042g00005 386 Gene3D - 266 314 - -
Stsc182042g00005 386 SUPERFAMILY Retrovirus zinc finger-like domains 268 314 IPR036875 GO:0003676|GO:0008270
Stsc182042g00005 386 ProSiteProfiles Zinc finger CCHC-type profile. 271 286 IPR001878 GO:0003676|GO:0008270
Stsc182042g00005 386 SMART c2hcfinal6 297 313 IPR001878 GO:0003676|GO:0008270
Stsc182042g00005 386 SMART c2hcfinal6 360 376 IPR001878 GO:0003676|GO:0008270
Stsc182042g00005 386 SMART c2hcfinal6 270 286 IPR001878 GO:0003676|GO:0008270
Stsc182042g00005 386 SMART c2hcfinal6 328 344 IPR001878 GO:0003676|GO:0008270
Stsc182042g00005 386 Pfam Zinc knuckle 359 375 IPR025829 -
Stsc182042g00005 386 SUPERFAMILY Retrovirus zinc finger-like domains 322 377 IPR036875 GO:0003676|GO:0008270
Stsc182042g00005 386 Gene3D - 321 386 - -
Stsc182042g00005 386 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 60 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182042g00005 Stsc-Chr182042 17765 20331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182042g00005 57 382 C2H2 Transcription Factor Family AT5G20220 64.583 8.78e-156 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182042g00005 - - gmx:100800156 592.038